Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.3e-296 1022.7 624 100.0
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.4e-165 587.4 650 67.1
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 1.4e-152 544.3 647 65.2
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 2.3e-152 543.5 677 62.0
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 3.9e-152 542.7 643 67.7
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 6.5e-131 472.2 699 54.5
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 2.1e-129 467.2 704 54.4
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.8e-125 454.1 663 55.4
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.8e-120 437.6 667 50.2
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 5.2e-120 436.0 675 57.9
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 4.9e-118 429.5 656 50.0
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 6.3e-118 429.1 674 50.4
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.1e-114 418.3 686 52.2
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.1e-114 418.3 686 51.7
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.5e-114 417.9 675 51.6
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.8e-112 411.0 654 53.1
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 9.8e-111 405.2 691 47.8
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.8e-109 401.0 674 49.1
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 7.3e-106 389.0 670 53.7
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 1.9e-101 374.4 662 48.0
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 3.0e-99 367.1 695 52.4
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.6e-97 361.3 664 44.7
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 5.2e-96 356.3 648 47.4
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 8.3e-94 349.0 676 47.0
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 5.4e-93 346.3 617 51.2
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 7.1e-93 345.9 623 48.3
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 1.3e-91 341.7 672 46.1
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.7e-91 341.3 672 46.7
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.7e-91 341.3 672 46.7
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 4.3e-90 336.7 676 47.5
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 9.5e-90 335.5 684 48.0
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.6e-89 333.6 672 46.0
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 5.2e-88 329.7 689 40.9
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.2e-87 328.6 617 48.8
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 1.2e-87 328.6 682 44.7
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 1.7e-86 324.7 616 49.5
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 8.4e-86 322.4 674 47.9
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 1.9e-85 321.2 639 42.4
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 4.1e-85 320.1 692 42.8
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 5.4e-85 319.7 688 43.8
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 7.1e-85 319.3 684 47.2
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 3.5e-84 317.0 703 43.0
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 3.5e-84 317.0 681 45.5
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 1.0e-83 315.5 701 41.7
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 2.3e-83 314.3 702 42.7
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.5e-82 311.6 606 44.1
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 9.6e-82 308.9 685 43.4
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.8e-79 299.7 671 42.3
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 5.8e-79 299.7 689 44.4
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.3e-78 298.5 676 46.9
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.4e-78 296.2 684 42.5
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 1.9e-77 294.7 673 42.6
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 2.4e-77 294.3 717 46.2
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.2e-77 293.5 674 41.7
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 5.4e-77 293.1 666 45.2
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.1e-77 292.7 608 45.4
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 1.6e-76 291.6 621 42.4
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 2.1e-76 291.2 687 44.3
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 1.5e-74 285.0 693 44.0
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 2.8e-73 280.8 691 44.1
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.6e-73 280.4 684 44.6
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 3.1e-72 277.3 557 43.8
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 7.6e-71 272.7 654 44.0
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 8.4e-70 269.2 708 45.6
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.7e-67 261.5 668 43.9
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 3.0e-67 260.8 651 40.7
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 2.5e-66 257.7 623 47.0
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.3e-65 255.4 599 46.7
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 3.6e-65 253.8 668 43.7
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 6.2e-65 253.1 646 42.1
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 6.9e-64 249.6 676 43.3
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.5e-63 248.4 642 39.1
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 3.4e-63 247.3 653 43.0
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 8.4e-62 242.7 364 65.1
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 4.2e-61 240.4 663 38.2
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 7.1e-61 239.6 582 43.6
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.6e-60 238.4 706 34.7
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 6.0e-60 236.5 663 43.3
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.3e-59 235.3 608 43.8
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.3e-59 234.6 649 36.4
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 2.5e-58 231.1 651 40.1
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 9.6e-58 229.2 652 43.7
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 1.6e-57 228.4 630 38.6
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 1.1e-56 225.7 598 38.1
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 9.0e-56 222.6 611 47.8
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.5e-55 221.9 636 41.8
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.6e-55 221.1 663 44.0
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 2.9e-54 217.6 658 38.4
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 4.9e-54 216.9 618 39.5
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 6.5e-54 216.5 401 45.1
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.1e-53 215.7 632 36.9
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.9e-53 214.9 670 38.4
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.7e-52 211.1 731 38.6
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.0e-51 209.1 601 44.1
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.3e-51 208.8 646 40.1
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.3e-50 204.1 646 40.1
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 9.6e-50 202.6 642 37.5
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 8.2e-49 199.5 608 43.4
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 6.9e-48 196.4 610 36.2
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 5.0e-46 190.3 258 50.8
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 8.4e-46 189.5 621 37.0
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 1.9e-45 188.3 613 35.6
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 3.2e-45 187.6 288 52.8
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 4.2e-45 187.2 296 48.3
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.2e-44 185.7 630 35.9
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.1e-44 184.9 660 41.8
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.7e-44 184.5 675 34.1
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.0e-43 182.6 615 41.5
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 2.3e-43 181.4 654 41.0
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 2.3e-43 181.4 588 34.0
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 5.1e-43 180.3 656 39.2
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.9e-42 178.3 548 40.3
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 1.9e-42 178.3 612 33.7
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 2.5e-42 177.9 641 38.4
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 7.4e-42 176.4 599 35.2
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 8.2e-41 172.9 483 41.0
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 2.4e-40 171.4 637 32.0
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 5.3e-40 170.2 633 31.1
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.2e-39 169.1 526 33.5
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 2.0e-39 168.3 525 35.2
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 7.7e-39 166.4 666 32.9
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.0e-38 166.0 536 38.1
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.0e-38 166.0 556 38.3
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.3e-38 165.6 536 44.4
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 6.5e-38 163.3 651 32.6
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 8.5e-38 162.9 644 31.8
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.1e-37 162.5 677 31.3
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 2.5e-37 161.4 277 51.3
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.7e-36 157.9 671 31.3
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 3.6e-36 157.5 652 32.2
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.8e-35 155.2 455 37.4
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.8e-35 155.2 628 33.1
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 3.0e-35 154.5 559 34.7
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.1e-34 152.5 540 32.8
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.5e-34 151.4 381 35.4
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.7e-33 148.7 550 32.7
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.4e-32 145.6 479 35.7
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 5.0e-30 137.1 242 43.4
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 4.2e-29 134.0 663 30.8
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 3.0e-27 127.9 121 60.3
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.6e-26 124.8 667 29.2
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 2.2e-25 121.7 599 30.6
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.8e-25 121.3 196 42.3
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 1.8e-24 118.6 396 46.7
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 2.4e-24 118.2 138 56.5
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 4.5e-23 114.0 482 33.2
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 1.9e-21 108.6 485 39.0
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 4.2e-21 107.5 485 32.6
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 4.2e-21 107.5 485 32.6
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 6.1e-20 103.6 130 46.9
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.4e-19 102.4 390 42.1
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.1e-18 99.4 632 32.0
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.5e-18 99.0 513 30.6
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 4.8e-17 94.0 126 51.6
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 2.4e-16 91.7 482 33.2
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.7e-15 88.2 232 33.2
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 5.9e-15 87.0 127 45.7
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.0e-14 84.0 524 31.7
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 3.2e-13 81.3 206 35.0
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 4.7e-12 77.4 244 32.0
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 6.1e-12 77.0 560 30.7
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 1.0e-11 76.3 94 53.2
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 2.8e-09 68.2 396 29.8
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 2.8e-09 68.2 192 32.8
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 8.3e-09 66.6 199 35.7
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 4.1e-08 64.3 503 29.6
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 5.9e-07 60.5 74 54.1
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 7.7e-07 60.1 64 57.8
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 3.8e-06 57.8 93 44.1
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 3.8e-06 57.8 224 29.9
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 6.5e-06 57.0 58 62.1
Psat3g059240 Pisum sativum HOM05D003795 ORTHO05D004308 6.5e-06 57.0 87 47.1


User provided reference genes

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