Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 0.0e+00 1346.6 666 100.0
Ca_14156_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.3e-266 922.2 836 61.0
Ca_22549_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.8e-243 845.5 767 62.2
Ca_22528_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.4e-226 790.0 826 55.9
Ca_04090_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.6e-225 784.3 782 57.3
Ca_15184_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.2e-224 782.7 691 63.0
Ca_14763_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-223 779.6 822 55.4
Ca_14697_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.8e-210 736.5 664 61.0
Ca_19239_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.2e-187 659.8 666 58.4
Ca_14742_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.5e-184 647.9 606 61.1
Ca_11659_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-176 624.0 392 81.1
Ca_25846_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.8e-173 613.6 733 51.3
Ca_23895_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.0e-161 573.5 804 46.6
Ca_23844_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-159 567.0 692 50.1
Ca_30746_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-159 567.0 692 50.1
Ca_05875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.8e-157 560.5 835 44.1
Ca_00995_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.7e-145 520.0 685 48.2
Ca_24116_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.4e-138 495.7 718 45.8
Ca_11652_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.2e-138 495.0 621 48.6
Ca_05433_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.2e-125 452.6 308 73.1
Ca_13200_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.1e-113 414.1 303 72.3
Ca_29875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.1e-113 414.1 303 72.3
Glyma.06G234900 Glycine max HOM05D005324 ORTHO05D001185 4.8e-110 402.9 756 36.2
Ca_22741_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.6e-108 395.6 531 48.6
Ca_03098_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-105 388.3 218 83.5
Ca_03097_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.0e-101 372.1 218 79.8
Ca_19342_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.5e-100 369.8 216 81.9
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 2.1e-97 360.9 811 32.1
Lj6g0018849 Lotus japonicus HOM05D005324 ORTHO05D001185 9.7e-95 352.1 772 33.2
Ca_24087_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.4e-93 347.4 207 85.5
Ca_14332_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.0e-93 345.5 218 82.6
Glyma.19G076000 Glycine max HOM05D005324 ORTHO05D001185 2.0e-92 344.4 469 45.0
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 1.1e-85 322.0 788 31.9
Ca_13201_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.1e-85 318.9 246 64.2
Ca_30799_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.1e-85 318.9 216 73.6
Ca_19340_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.6e-81 308.1 222 76.1
Glyma.11G180400 Glycine max HOM05D005324 ORTHO05D001185 2.5e-74 284.3 668 31.1
Ca_23845_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.9e-72 276.9 286 57.7
Ca_18104_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.8e-72 275.8 502 37.3
Ca_21962_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.1e-69 265.8 431 39.0
Lj4g0014350 Lotus japonicus HOM05D005324 ORTHO05D001185 1.2e-68 265.4 608 32.2
Ca_07874_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.6e-68 265.0 399 42.6
Atru.chr10.1416 Acer truncatum HOM05D005324 ORTHO05D001185 8.5e-67 259.2 673 30.0
Ca_24137_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.5e-66 258.5 421 39.4
Ca_30800_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-66 258.1 315 49.8
Lj6g0011364 Lotus japonicus HOM05D005324 ORTHO05D001185 1.5e-63 248.4 712 29.2
Lj3g0022640 Lotus japonicus HOM05D005324 ORTHO05D001185 5.7e-63 246.5 334 41.9
Ca_30934_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.2e-62 242.7 383 43.1
Atru.chr4.959 Acer truncatum HOM05D005324 ORTHO05D001185 1.2e-60 238.8 361 35.7
Ca_02976_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.0e-60 238.0 167 68.3
Atru.chr7.181 Acer truncatum HOM05D005324 ORTHO05D001185 5.9e-60 236.5 686 27.4
Ca_05167_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.0e-57 226.1 210 57.1
Atru.chr4.1769 Acer truncatum HOM05D005324 ORTHO05D001185 1.4e-56 225.3 300 38.7
Ca_06253_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.4e-56 225.3 349 40.7
Ca_05670_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.8e-55 219.2 120 84.2
Ca_03092_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.9e-51 207.6 197 57.9
Thhalv10012231m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.6e-49 201.8 460 29.1
Ca_05166_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000002 1.0e-48 199.1 125 84.0
Thhalv10028344m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.0e-48 199.1 500 29.8
Medtr3g436680 Medicago truncatula HOM05D005324 ORTHO05D001185 1.0e-48 199.1 255 43.5
Lj4g0024804 Lotus japonicus HOM05D005324 ORTHO05D001185 2.8e-46 191.0 584 28.4
Ca_02958_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.1e-45 189.1 144 64.6
Ca_30434_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.1e-45 189.1 144 64.6
Thhalv10023188m.g Eutrema salsugineum HOM05D003376 ORTHO05D000002 1.4e-45 188.7 428 30.1
Atru.chr3.3306 Acer truncatum HOM05D000477 ORTHO05D001185 7.0e-45 186.4 344 34.3
Lj3g0011497 Lotus japonicus HOM05D005324 ORTHO05D001185 7.0e-45 186.4 244 40.2
Ca_19341_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000048 5.9e-44 183.3 110 85.5
Ca_04347_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.8e-44 183.0 111 73.9
Ca_20262_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.3e-42 177.6 131 71.8
Thhalv10002230m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 7.3e-42 176.4 325 32.9
Thhalv10003477m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.2e-41 175.6 368 30.4
Ca_05669_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.6e-41 175.3 91 84.6
Ca_07873_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.4e-40 172.2 94 80.9
Ca_13202_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.8e-40 171.8 432 33.3
Ca_29877_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.8e-40 171.8 431 33.2
Thhalv10028343m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 3.1e-40 171.0 351 32.5
A09p27420 Brassica napus HOM05D003376 ORTHO05D001185 5.2e-40 170.2 550 28.9
Atru.chr3.2329 Acer truncatum HOM05D003326 ORTHO05D001185 5.8e-39 166.8 548 26.6
A05p12450 Brassica napus HOM05D003376 ORTHO05D001185 7.5e-39 166.4 548 27.9
Thhalv10001103m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 7.5e-39 166.4 328 32.9
Ca_30985_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.8e-39 166.0 88 83.0
Atru.chr13.2462 Acer truncatum HOM05D005324 ORTHO05D001185 1.1e-37 162.5 357 30.0
Thhalv10003417m.g Eutrema salsugineum HOM05D003376 ORTHO05D000048 1.1e-37 162.5 458 28.4
A06p25220 Brassica napus HOM05D003376 ORTHO05D001185 5.4e-37 160.2 515 27.0
Atru.chr9.596 Acer truncatum HOM05D005324 ORTHO05D001185 2.0e-36 158.3 497 27.8
AL88U10020 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.0e-36 158.3 489 27.6
HanXRQChr09g0262521 Helianthus annuus HOM05D003376 ORTHO05D001185 2.7e-36 157.9 337 31.5
Medtr3g436690 Medicago truncatula HOM05D005324 ORTHO05D001185 4.6e-36 157.1 129 58.9
AL1G57140 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.3e-35 155.6 400 30.8
HanXRQChr10g0281981 Helianthus annuus HOM05D003376 ORTHO05D001185 1.3e-35 155.6 314 32.8
HanXRQChr09g0262541 Helianthus annuus HOM05D003326 ORTHO05D001185 1.7e-35 155.2 325 31.7
AL88U10010 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.3e-35 154.8 415 29.9
HanXRQChr09g0262491 Helianthus annuus HOM05D003376 ORTHO05D001185 2.3e-35 154.8 325 31.7
HanXRQChr09g0267851 Helianthus annuus HOM05D003376 ORTHO05D001185 3.0e-35 154.5 325 31.7
AL8G17320 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.5e-34 152.1 347 30.5
AL6G37690 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 7.3e-34 149.8 520 27.1
HanXRQChr09g0262531 Helianthus annuus HOM05D003376 ORTHO05D001185 9.5e-34 149.4 285 32.3
AL6G42760 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.1e-33 148.3 519 27.4
ECA246G2607 Erigeron canadensis HOM05D003326 ORTHO05D001185 3.6e-33 147.5 651 26.4
ECA248G1318 Erigeron canadensis HOM05D003376 ORTHO05D001185 8.9e-32 142.9 278 32.7
ECA236G2931 Erigeron canadensis HOM05D003376 ORTHO05D001185 1.2e-31 142.5 644 26.6
Atru.chr9.334 Acer truncatum HOM05D005324 ORTHO05D001185 1.5e-31 142.1 158 40.5
Atru.chr1.2264 Acer truncatum HOM05D005324 ORTHO05D001185 4.4e-31 140.6 351 28.5
Atru.chr5.1825 Acer truncatum HOM05D005324 ORTHO05D001185 8.3e-30 136.3 166 39.8
Ca_28515_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.3e-30 136.3 72 86.1
Thhalv10000496m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.9e-29 135.2 200 32.5
Ca_23425_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.2e-29 132.9 87 81.6
Atru.chr1.2372 Acer truncatum HOM05D005324 ORTHO05D001185 1.2e-28 132.5 137 46.7
Medtr4g103910 Medicago truncatula HOM05D005324 ORTHO05D001185 6.0e-28 130.2 84 72.6
Thhalv10001272m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.0e-27 129.4 416 28.6
Lj1g0026229 Lotus japonicus HOM05D005324 ORTHO05D001185 1.3e-27 129.0 136 46.3
Cc07_g21310 Coffea canephora HOM05D003376 ORTHO05D011089 2.3e-27 128.3 283 32.9
HanXRQChr09g0262551 Helianthus annuus HOM05D003376 ORTHO05D001185 3.0e-27 127.9 207 34.8
Atru.chr9.333 Acer truncatum HOM05D005324 ORTHO05D001185 8.6e-27 126.3 218 38.1
COL.COLO4_29280 Corchorus olitorius HOM05D003376 ORTHO05D001185 2.3e-24 118.2 666 23.1
BolC1t03750H Brassica oleracea HOM05D003376 ORTHO05D001185 4.0e-24 117.5 209 31.1
ECA234G2242 Erigeron canadensis HOM05D000088 ORTHO05D001030 4.0e-24 117.5 234 35.0
AL8G17310 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 4.4e-23 114.0 521 25.3
Medtr2g048620 Medicago truncatula HOM05D001200 ORTHO05D002731 4.4e-23 114.0 97 63.9
Cc00_g28290 Coffea canephora HOM05D003326 ORTHO05D001185 1.7e-22 112.1 381 27.8
C04p09000 Brassica napus HOM05D003376 ORTHO05D001185 2.9e-22 111.3 251 32.3
ECA236G2821 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-22 111.3 330 25.5
Ca_13666_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.7e-22 110.9 134 50.0
Thhalv10002934m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 3.2e-21 107.8 435 26.9
Cc00_g34090 Coffea canephora HOM05D005324 ORTHO05D001185 2.7e-20 104.8 342 29.2
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 7.8e-20 103.2 228 28.9
Thhalv10028029m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 8.6e-19 99.8 461 22.3
Atru.chr4.2110 Acer truncatum HOM05D005324 ORTHO05D001185 1.2e-17 95.9 152 35.5
BcaC06g35708 Brassica carinata HOM05D003376 ORTHO05D001185 1.2e-17 95.9 346 26.0
Cc00_g09810 Coffea canephora HOM05D003326 ORTHO05D001185 1.2e-17 95.9 207 31.4
Ca_02959_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.6e-17 94.4 133 45.9
BcaB05g23142 Brassica carinata HOM05D003376 ORTHO05D001185 1.4e-16 92.4 181 30.9
Glyma.11G236000 Glycine max HOM05D005324 ORTHO05D001185 3.1e-16 91.3 100 46.0
BcaC09g49326 Brassica carinata HOM05D003376 ORTHO05D001185 1.2e-15 89.4 120 35.8
Carub.0002s1007 Capsella rubella HOM05D003376 ORTHO05D001185 1.2e-12 79.3 178 31.5
Ca_02242_v3 Cicer arietinum L. HOM05D003326 ORTHO05D001185 1.0e-11 76.3 56 66.1
Atru.chr13.2474 Acer truncatum HOM05D005324 ORTHO05D001185 6.6e-11 73.6 136 33.1
Atru.chr5.1763 Acer truncatum HOM05D005324 ORTHO05D001185 4.3e-10 70.9 139 30.2
Ca_01226_v3 Cicer arietinum L. HOM05D003326 ORTHO05D001185 9.6e-10 69.7 31 90.3
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 9.6e-10 69.7 104 29.8
A04p12690 Brassica napus HOM05D003376 ORTHO05D001185 1.2e-09 69.3 120 32.5
BraA04t16927Z Brassica rapa HOM05D003376 ORTHO05D001185 1.2e-09 69.3 120 32.5
Atru.chr1.2076 Acer truncatum HOM05D005324 ORTHO05D001185 2.1e-09 68.6 120 33.3
Lj3g0004678 Lotus japonicus HOM05D003326 ORTHO05D001185 1.8e-08 65.5 165 28.5
Ca_30430_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.4e-08 65.1 68 54.4
Atru.chr4.961 Acer truncatum HOM05D003326 ORTHO05D001185 4.0e-08 64.3 47 51.1
BolC7t41653H Brassica oleracea HOM05D003376 ORTHO05D001185 1.2e-07 62.8 226 26.5
Lalb_Chr04g0256371 Lupinus albus HOM05D005324 ORTHO05D001185 1.2e-07 62.8 43 58.1
AL8G17340 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 3.4e-07 61.2 225 24.0
BcaB04g18321 Brassica carinata HOM05D003376 ORTHO05D001185 3.4e-07 61.2 176 26.1
Atru.chr4.960 Acer truncatum HOM05D005324 ORTHO05D001185 5.8e-07 60.5 67 46.3
C07p27990 Brassica napus HOM05D003376 ORTHO05D001185 1.3e-06 59.3 256 28.1
Ca_13672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.2e-06 58.5 63 52.4
Atru.chr9.330 Acer truncatum HOM05D005324 ORTHO05D001185 2.9e-06 58.2 129 31.8


User provided reference genes

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