Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 9.9e-220 766.5 403 100.0
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.6e-214 749.2 403 97.3
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 4.5e-172 608.2 405 81.5
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 3.8e-163 578.6 436 75.5
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 1.2e-151 540.4 408 75.5
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 3.3e-138 495.7 403 70.5
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 2.3e-128 463.0 403 67.2
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 7.1e-125 451.4 350 72.0
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 3.5e-124 449.1 367 68.7
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 4.3e-114 415.6 338 68.9
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 8.1e-113 411.4 258 84.9
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 1.1e-112 411.0 351 67.0
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 3.4e-103 379.4 376 58.2
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 9.9e-103 377.9 354 60.2
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 5.6e-98 362.1 417 53.2
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 3.7e-97 359.4 417 53.0
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 2.2e-94 350.1 409 52.1
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.4e-93 347.4 407 52.6
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 5.5e-93 345.5 428 50.7
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 1.5e-90 337.4 403 50.9
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 9.7e-90 334.7 418 50.0
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 6.3e-89 332.0 414 50.5
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 1.8e-88 330.5 415 49.2
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 2.4e-88 330.1 408 50.2
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 3.1e-88 329.7 407 51.1
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 3.1e-88 329.7 403 50.9
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 6.9e-88 328.6 407 49.9
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 2.2e-86 323.6 415 49.4
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 8.5e-86 321.6 354 54.5
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 1.1e-85 321.2 407 48.9
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 1.2e-84 317.8 401 47.9
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.2e-84 317.8 400 48.5
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 7.9e-84 315.1 408 47.3
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.0e-83 314.7 399 47.6
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 3.9e-83 312.8 406 47.0
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.1e-82 311.2 411 50.1
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 4.3e-82 309.3 351 53.8
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 5.7e-82 308.9 367 50.4
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 1.3e-81 307.8 344 53.2
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 3.7e-81 306.2 415 48.2
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 8.2e-81 305.1 270 60.4
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.8e-80 303.9 415 48.0
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 3.1e-80 303.1 408 47.3
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 6.9e-80 302.0 425 46.1
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.2e-79 301.2 403 47.1
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 3.4e-79 299.7 416 46.2
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 5.9e-79 298.9 408 46.3
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 1.0e-78 298.1 426 46.0
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.7e-78 297.4 419 46.5
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 3.8e-78 296.2 424 46.7
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 5.0e-78 295.8 405 44.7
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 6.5e-78 295.4 412 44.4
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 5.5e-77 292.4 220 70.5
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 5.5e-77 292.4 404 46.3
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 7.2e-77 292.0 351 50.4
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.2e-76 291.2 422 45.5
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 2.7e-76 290.0 397 45.6
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 3.6e-76 289.7 419 44.9
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 3.6e-76 289.7 401 45.6
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 2.3e-75 287.0 359 48.2
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 3.9e-75 286.2 263 59.7
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 2.0e-74 283.9 418 44.7
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 3.3e-74 283.1 405 44.4
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 5.7e-74 282.3 335 51.0
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 2.2e-73 280.4 225 65.3
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 1.1e-72 278.1 371 46.1
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 2.4e-72 276.9 417 46.3
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 2.4e-72 276.9 405 42.2
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.5e-71 274.2 408 44.9
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 5.9e-71 272.3 409 42.8
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 1.7e-70 270.8 382 44.0
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 2.2e-70 270.4 410 43.7
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 3.2e-69 266.5 184 77.2
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 7.2e-69 265.4 430 41.4
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 7.2e-69 265.4 435 41.1
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.0e-67 261.5 353 47.6
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 1.4e-67 261.2 296 49.3
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 6.7e-67 258.8 245 58.4
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 8.8e-67 258.5 348 48.0
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 6.3e-65 252.3 352 46.3
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 8.2e-65 251.9 245 56.7
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 1.1e-64 251.5 401 42.1
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 1.8e-64 250.8 217 67.7
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 5.3e-64 249.2 437 38.7
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 9.1e-64 248.4 248 55.6
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 2.0e-63 247.3 248 55.6
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 4.5e-63 246.1 248 54.8
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.8e-62 243.0 458 39.1
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 4.7e-60 236.1 251 53.0
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 4.0e-59 233.0 284 48.6
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 4.0e-59 233.0 284 48.6
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 4.0e-59 233.0 284 48.6
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 5.7e-58 229.2 284 48.2
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 5.7e-58 229.2 353 43.6
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 7.5e-58 228.8 245 53.5
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 1.3e-57 228.0 386 41.7
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.7e-57 227.6 405 38.5
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.2e-57 227.3 406 38.7
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.4e-56 223.8 398 39.7
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 3.1e-56 223.4 248 49.2
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 4.5e-55 219.5 407 39.3
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.7e-54 217.6 427 38.9
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 4.2e-53 213.0 406 38.4
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 1.6e-52 211.1 184 62.0
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.1e-52 210.7 235 52.3
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 8.0e-52 208.8 216 60.2
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 1.0e-51 208.4 250 49.2
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 2.3e-51 207.2 251 47.4
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.2e-50 204.9 432 37.3
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.5e-50 204.5 182 60.4
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 1.3e-49 201.4 213 52.6
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 8.3e-49 198.7 208 58.2
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 2.4e-48 197.2 263 45.2
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 1.2e-47 194.9 257 46.3
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 1.0e-46 191.8 243 46.1
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 1.3e-46 191.4 409 35.9
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 3.8e-46 189.9 303 41.6
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 1.9e-45 187.6 238 47.5
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 4.2e-45 186.4 192 54.7
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 4.2e-45 186.4 413 34.1
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 4.7e-44 183.0 295 42.0
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 5.2e-43 179.5 362 37.0
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 6.8e-43 179.1 183 55.2
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 5.4e-40 169.5 122 72.1
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 5.6e-37 159.5 296 40.5
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 3.4e-34 150.2 218 44.5
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 9.8e-34 148.7 130 60.8
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.4e-32 144.8 198 41.4
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 4.6e-31 139.8 292 36.3
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 1.3e-30 138.3 84 81.0
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.5e-29 134.8 253 40.3
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 1.2e-28 131.7 108 63.9
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 6.8e-27 125.9 137 50.4
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 1.9e-24 117.9 94 64.9
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 2.7e-23 114.0 85 64.7
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 6.0e-23 112.8 218 37.2
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 7.8e-23 112.5 111 56.8
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 3.3e-21 107.1 81 60.5
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 2.1e-20 104.4 118 49.2
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 2.1e-20 104.4 118 49.2
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 1.1e-19 102.1 114 50.0
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 5.8e-18 96.3 86 58.1
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 1.9e-16 91.3 83 56.6
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.9e-16 91.3 213 31.9
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 4.1e-16 90.1 215 34.0
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 1.6e-15 88.2 259 32.0
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 5.1e-14 83.2 81 54.3
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 5.6e-13 79.7 74 55.4
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.8e-11 74.7 55 63.6
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.4e-11 74.3 49 69.4
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 3.8e-09 67.0 113 39.8
arahy.Tifrunner.gnm1.ann1.DT6YRW Arachis hypogaea HOM05D004411 ORTHO05D005569 1.4e-08 65.1 83 48.2


User provided reference genes

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