Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 3.5e-71 271.6 140 100.0
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 6.6e-62 240.7 140 85.7
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 4.3e-61 238.0 140 83.6
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.1e-59 233.4 140 83.6
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 5.2e-59 231.1 137 83.2
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 6.8e-59 230.7 137 81.0
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 6.8e-59 230.7 140 80.7
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 8.9e-59 230.3 137 81.0
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 1.5e-58 229.6 137 83.2
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.7e-57 226.1 130 83.1
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 8.3e-57 223.8 136 80.9
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.4e-56 223.0 137 79.6
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.0e-54 216.9 137 77.4
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 4.3e-53 211.5 131 77.1
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 7.3e-53 210.7 137 73.0
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 3.6e-52 208.4 136 73.5
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 4.7e-52 208.0 133 75.2
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 4.7e-52 208.0 131 74.0
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.4e-51 206.5 133 75.2
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.4e-51 206.5 133 72.9
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.4e-51 206.5 131 74.0
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.8e-51 206.1 137 72.3
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 3.1e-51 205.3 134 74.6
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 5.2e-51 204.5 130 73.8
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 6.8e-51 204.1 131 71.0
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.6e-50 202.2 137 71.5
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 2.6e-50 202.2 125 76.8
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 1.3e-49 199.9 130 73.1
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.3e-49 199.9 130 73.8
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.7e-49 199.5 131 72.5
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 2.2e-49 199.1 131 71.0
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.9e-49 198.7 131 73.3
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 3.8e-49 198.4 134 71.6
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 3.8e-49 198.4 129 73.6
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 3.8e-49 198.4 131 74.8
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 3.8e-49 198.4 137 69.3
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 4.9e-49 198.0 131 72.5
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 4.9e-49 198.0 137 67.9
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 6.4e-49 197.6 134 70.1
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 6.4e-49 197.6 130 71.5
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 8.4e-49 197.2 137 67.9
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 8.4e-49 197.2 131 70.2
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 8.4e-49 197.2 135 71.9
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 1.1e-48 196.8 131 71.0
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 1.1e-48 196.8 133 71.4
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.4e-48 196.4 137 70.1
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 1.9e-48 196.1 133 71.4
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 2.4e-48 195.7 131 71.8
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 2.4e-48 195.7 130 71.5
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 2.4e-48 195.7 137 70.1
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 3.2e-48 195.3 131 72.5
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 3.2e-48 195.3 131 70.2
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 4.1e-48 194.9 134 69.4
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 4.1e-48 194.9 128 71.9
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 4.1e-48 194.9 127 72.4
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 5.4e-48 194.5 137 67.9
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 5.4e-48 194.5 133 70.7
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 5.4e-48 194.5 133 70.7
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 5.4e-48 194.5 134 70.1
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 5.4e-48 194.5 128 71.1
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 2.1e-47 192.6 131 67.2
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 2.1e-47 192.6 132 68.2
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.7e-47 192.2 135 68.1
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 3.5e-47 191.8 134 68.7
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.0e-46 190.3 137 64.2
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 1.0e-46 190.3 131 68.7
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.3e-46 189.9 137 66.4
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.7e-46 189.5 131 68.7
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.7e-46 189.5 126 71.4
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 2.3e-46 189.1 133 66.9
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 3.0e-46 188.7 132 68.9
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 3.0e-46 188.7 127 70.9
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 3.9e-46 188.3 128 68.0
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 6.6e-46 187.6 134 65.7
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 6.6e-46 187.6 131 70.2
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 6.6e-46 187.6 129 69.0
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 8.6e-46 187.2 131 67.9
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 1.1e-45 186.8 132 68.2
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.5e-45 186.4 131 67.2
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.5e-45 185.7 133 67.7
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 2.5e-45 185.7 131 67.2
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 3.3e-45 185.3 131 67.2
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 5.6e-45 184.5 134 64.2
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 5.6e-45 184.5 134 64.9
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.2e-44 183.3 134 64.2
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.2e-44 183.3 125 68.8
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.2e-44 183.3 132 68.9
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.6e-44 183.0 132 67.4
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 2.1e-44 182.6 134 64.2
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.8e-44 182.2 125 70.4
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 2.8e-44 182.2 135 64.4
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 3.6e-44 181.8 131 64.9
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 4.7e-44 181.4 135 63.0
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 4.7e-44 181.4 134 64.2
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 4.7e-44 181.4 134 64.2
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 6.2e-44 181.0 135 63.0
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 1.1e-43 180.3 134 62.7
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 1.4e-43 179.9 134 62.7
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.4e-43 179.9 134 63.4
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.4e-43 179.9 134 62.7
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.4e-43 179.9 134 62.7
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.4e-43 179.9 124 71.0
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.4e-43 179.9 135 64.4
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 1.8e-43 179.5 129 68.2
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.8e-43 179.5 129 68.2
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.8e-43 179.5 129 68.2
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.8e-43 179.5 135 64.4
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.8e-43 179.5 135 64.4
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 2.4e-43 179.1 129 65.9
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 3.1e-43 178.7 121 71.1
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 3.1e-43 178.7 134 62.7
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 4.0e-43 178.3 131 67.9
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 5.2e-43 177.9 134 61.9
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 5.2e-43 177.9 135 63.0
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.2e-43 177.9 135 63.0
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.9e-43 177.6 129 66.7
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 8.9e-43 177.2 131 65.6
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 1.5e-42 176.4 128 64.1
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 2.0e-42 176.0 134 64.9
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 2.0e-42 176.0 134 61.9
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 2.0e-42 176.0 134 61.9
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.0e-42 176.0 129 67.4
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 2.0e-42 176.0 125 68.0
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.6e-42 175.6 131 64.9
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.4e-42 175.3 133 63.2
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 4.4e-42 174.9 134 64.2
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 5.8e-42 174.5 130 64.6
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 9.9e-42 173.7 122 66.4
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 9.9e-42 173.7 125 64.8
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.7e-41 172.9 137 59.1
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.2e-41 172.6 125 64.8
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 2.2e-41 172.6 131 64.9
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.2e-41 172.6 128 64.1
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 2.9e-41 172.2 182 52.2
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 6.4e-41 171.0 133 60.9
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 8.4e-41 170.6 130 63.8
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 1.9e-40 169.5 127 64.6
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.4e-40 169.1 129 62.0
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 2.4e-40 169.1 127 65.4
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 2.1e-39 166.0 122 66.4
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 2.7e-39 165.6 104 75.0
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 5.1e-38 161.4 106 73.6
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 4.3e-37 158.3 128 57.0
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.8e-36 155.6 106 67.9
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 2.8e-36 155.6 122 59.8
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 9.3e-32 140.6 134 57.5
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 3.6e-28 128.6 88 65.9
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 8.1e-28 127.5 94 62.8
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 4.0e-27 125.2 125 56.8
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 1.5e-26 123.2 91 69.2
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 4.5e-18 95.1 109 45.0
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 3.8e-17 92.0 126 38.1
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 3.2e-16 89.0 102 42.2
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 7.9e-15 84.3 72 54.2
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 3.0e-14 82.4 68 55.9
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 1.3e-12 77.0 129 32.6
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 2.8e-12 75.9 134 29.9
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 2.4e-11 72.8 70 51.4
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.3e-11 71.6 137 38.7
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.5e-10 70.1 128 33.6
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 1.9e-08 63.2 69 46.4


User provided reference genes

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