Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 3.2e-220 768.1 374 100.0
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 1.4e-180 636.3 369 82.9
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 1.5e-174 616.3 376 81.4
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 2.6e-174 615.5 357 83.2
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 5.2e-154 548.1 376 71.3
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 6.7e-154 547.7 374 72.7
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 1.8e-151 539.7 374 70.1
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 5.3e-151 538.1 375 70.1
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 2.3e-138 496.1 383 65.8
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 2.6e-129 466.1 380 63.4
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 2.3e-122 443.0 285 74.0
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 2.0e-121 439.9 377 59.9
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 3.9e-117 425.6 376 58.5
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 3.3e-116 422.5 374 60.4
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 4.7e-115 418.7 372 58.6
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 9.8e-113 411.0 386 58.0
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 1.3e-112 410.6 345 60.3
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 2.9e-112 409.5 352 59.4
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 4.9e-112 408.7 356 60.1
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 6.4e-112 408.3 374 56.4
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 6.4e-112 408.3 341 61.3
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 6.4e-112 408.3 375 57.6
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.4e-111 407.1 341 61.0
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.9e-111 406.8 386 57.5
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 4.1e-111 405.6 364 58.2
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 2.1e-110 403.3 376 56.6
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 2.7e-110 402.9 382 55.0
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 7.8e-110 401.4 383 54.8
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 3.0e-109 399.4 373 55.5
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 6.6e-109 398.3 372 56.7
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 1.1e-108 397.5 378 56.6
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 2.5e-108 396.4 356 58.1
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 3.3e-108 396.0 374 55.3
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 3.3e-108 396.0 376 56.1
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 4.3e-108 395.6 373 55.2
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 7.3e-108 394.8 377 56.8
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.2e-107 394.0 386 55.7
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.6e-107 393.7 377 56.5
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.6e-107 392.5 377 56.5
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 6.2e-107 391.7 386 54.4
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 8.1e-107 391.3 377 56.2
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 3.1e-106 389.4 374 55.9
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 4.0e-106 389.0 377 55.2
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 4.0e-106 389.0 369 56.6
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 8.9e-106 387.9 369 56.4
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 1.5e-105 387.1 377 55.2
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.5e-105 387.1 377 55.2
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.5e-105 387.1 374 55.3
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 1.5e-105 387.1 431 50.1
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 9.9e-105 384.4 403 53.6
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 1.3e-104 384.0 370 55.7
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 1.7e-104 383.6 379 54.9
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.2e-104 383.3 355 56.1
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 8.3e-104 381.3 366 55.7
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 8.3e-104 381.3 334 56.3
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 1.7e-101 373.6 339 56.9
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 3.9e-101 372.5 370 54.6
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 8.6e-101 371.3 387 50.9
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 1.1e-100 370.9 337 58.2
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 5.6e-100 368.6 378 52.6
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 9.5e-100 367.9 362 54.4
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 1.2e-99 367.5 331 56.5
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.6e-99 367.1 305 62.0
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 1.6e-99 367.1 365 53.4
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.8e-99 366.3 305 62.3
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 8.1e-99 364.8 366 54.1
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 1.1e-98 364.4 371 52.3
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 1.4e-98 364.0 328 55.2
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 2.4e-98 363.2 378 51.9
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 6.8e-98 361.7 295 60.3
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 1.2e-97 360.9 384 51.3
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.0e-97 360.1 372 51.3
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 2.0e-97 360.1 366 53.8
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 7.6e-97 358.2 383 51.2
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 9.9e-97 357.8 367 53.4
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 1.3e-96 357.5 318 57.9
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 2.2e-96 356.7 318 57.9
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 8.4e-96 354.8 327 57.5
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 1.1e-95 354.4 318 57.2
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 3.2e-95 352.8 321 55.8
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 5.4e-95 352.1 380 51.1
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 7.1e-95 351.7 276 62.0
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 9.2e-95 351.3 318 56.3
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.2e-94 350.9 321 56.4
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.2e-94 350.9 348 54.3
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 2.1e-94 350.1 375 50.9
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 4.6e-94 349.0 341 52.8
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 6.0e-94 348.6 342 54.4
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 3.9e-93 345.9 295 59.0
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 5.1e-93 345.5 347 51.3
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 8.7e-93 344.7 322 55.6
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 1.1e-92 344.4 297 58.6
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.5e-92 344.0 316 56.6
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 4.3e-92 342.4 340 53.8
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 4.3e-92 342.4 365 51.2
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 5.6e-92 342.0 290 60.0
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 5.6e-92 342.0 316 56.6
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 7.3e-92 341.7 297 57.9
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.1e-91 340.1 335 53.4
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.6e-89 333.2 308 53.9
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 2.6e-89 333.2 293 59.0
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 6.4e-88 328.6 352 50.3
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 8.4e-88 328.2 316 55.1
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 1.4e-87 327.4 293 58.7
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 1.7e-85 320.5 287 55.4
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 3.0e-85 319.7 334 50.3
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 6.9e-82 308.5 239 65.7
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.6e-81 306.6 335 49.6
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 1.7e-80 303.9 329 49.8
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 9.3e-79 298.1 327 49.5
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 1.3e-77 294.3 323 51.4
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 3.7e-75 286.2 287 50.2
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 4.8e-75 285.8 292 50.3
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 1.1e-74 284.6 282 53.5
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 2.6e-65 253.4 287 44.9
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 4.9e-64 249.2 295 44.4
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 1.2e-62 244.6 293 44.4
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.6e-62 244.2 268 47.0
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.8e-61 240.7 299 42.1
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 3.3e-60 236.5 293 44.7
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 7.4e-60 235.3 192 62.5
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 3.7e-59 233.0 264 49.6
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.9e-55 220.7 283 43.1
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 8.2e-51 205.3 163 60.1
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 1.3e-35 154.8 173 47.4
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 2.0e-28 131.0 131 54.2
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 2.7e-25 120.6 130 53.1
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 4.7e-22 109.8 93 57.0
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.5e-20 104.8 169 40.2
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 4.4e-20 103.2 86 60.5
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 1.2e-17 95.1 104 47.1
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 7.7e-17 92.4 87 56.3
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 3.0e-13 80.5 120 39.2
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 3.0e-13 80.5 120 39.2
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 2.8e-11 73.9 62 62.9
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.7e-09 67.4 120 35.8
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 6.6e-08 62.8 46 60.9
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.9e-07 61.2 71 45.1
DCAR_013830 Daucus carota HOM05D004293 ORTHO05D005044 2.8e-06 57.4 103 39.8
arahy.Tifrunner.gnm1.ann1.E80PU7 Arachis hypogaea HOM05D000559 ORTHO05D000596 3.6e-06 57.0 111 34.2
ATR0691G298 Amborella trichopoda HOM05D000559 ORTHO05D000596 4.7e-06 56.6 141 32.6
Duzib093G2062 Durio zibethinus HOM05D004293 ORTHO05D005044 4.7e-06 56.6 120 36.7
Lj7A414T46 Lonicera japonica HOM05D000559 ORTHO05D000596 6.1e-06 56.2 87 36.8
BolC4t22609H Brassica oleracea HOM05D005476 ORTHO05D032808 8.0e-06 55.8 46 63.0
TAR376G0140 Trochodendron aralioides HOM05D004293 ORTHO05D005044 8.0e-06 55.8 90 38.9


User provided reference genes

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