Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 2.9e-105 385.2 186 100.0
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 8.7e-94 347.1 187 89.3
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 1.3e-92 343.2 184 89.1
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 9.9e-90 333.6 186 85.5
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 4.2e-88 328.2 187 84.5
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 5.4e-88 327.8 186 83.3
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 2.7e-87 325.5 186 83.3
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 2.3e-86 322.4 186 83.3
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 3.0e-86 322.0 186 82.3
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 1.1e-83 313.5 185 78.9
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 1.5e-82 309.7 179 79.3
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 9.3e-80 300.4 184 75.5
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 2.7e-79 298.9 183 78.1
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 1.0e-78 297.0 185 75.1
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 5.1e-78 294.7 184 73.9
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 8.7e-78 293.9 186 74.7
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 5.6e-77 291.2 184 71.7
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 5.6e-77 291.2 184 70.1
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 7.4e-77 290.8 184 72.8
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 9.6e-77 290.4 183 72.7
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 2.8e-76 288.9 184 71.2
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 8.2e-76 287.3 183 71.0
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 5.3e-75 284.6 184 71.2
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 6.9e-75 284.3 186 69.4
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 9.0e-75 283.9 183 70.5
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 2.6e-74 282.3 184 72.3
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 1.7e-73 279.6 180 68.9
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 2.2e-73 279.3 185 70.3
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.8e-73 278.5 183 69.4
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 1.1e-72 276.9 181 69.1
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 1.4e-72 276.6 181 69.1
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 2.5e-72 275.8 184 66.3
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 3.2e-72 275.4 185 69.2
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 4.2e-72 275.0 173 72.3
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 5.5e-72 274.6 177 71.2
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 5.5e-72 274.6 177 71.2
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 9.3e-72 273.9 179 69.3
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 9.3e-72 273.9 179 68.7
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.6e-71 273.1 184 66.8
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.6e-71 273.1 181 67.4
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 2.1e-71 272.7 185 67.6
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 2.7e-71 272.3 177 70.1
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.7e-71 272.3 181 68.0
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 2.7e-71 272.3 175 71.4
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.0e-70 270.4 189 66.7
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 3.0e-70 268.9 185 67.6
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 5.1e-70 268.1 184 64.7
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 1.9e-69 266.2 179 67.0
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 2.5e-69 265.8 179 67.6
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 3.3e-69 265.4 180 67.8
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 4.3e-69 265.0 184 65.8
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 5.7e-69 264.6 180 63.9
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 5.7e-69 264.6 184 66.3
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 7.4e-69 264.2 182 66.5
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 7.4e-69 264.2 178 66.3
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 7.4e-69 264.2 184 65.2
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 1.3e-68 263.5 180 63.3
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 1.6e-68 263.1 184 65.2
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 2.2e-68 262.7 184 65.8
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 3.7e-68 261.9 181 65.2
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 6.3e-68 261.2 181 67.4
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 8.2e-68 260.8 186 64.0
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 8.2e-68 260.8 186 63.4
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 1.1e-67 260.4 185 65.9
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 9.0e-67 257.3 176 67.6
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 1.2e-66 256.9 181 67.4
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 2.0e-66 256.1 180 67.2
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 3.4e-66 255.4 178 66.9
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 7.7e-66 254.2 182 65.9
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 7.7e-66 254.2 182 66.5
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.0e-65 253.8 178 64.6
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.7e-65 253.1 181 65.2
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 2.9e-65 252.3 181 65.2
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 8.5e-65 250.8 178 64.0
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 1.4e-64 250.0 177 63.8
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 2.5e-64 249.2 176 64.8
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 3.2e-64 248.8 177 65.5
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 4.2e-64 248.4 173 65.9
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 4.2e-64 248.4 173 65.3
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.6e-63 246.5 167 67.1
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 2.1e-63 246.1 179 61.5
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 4.6e-63 245.0 182 65.4
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 6.1e-63 244.6 156 71.2
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.0e-62 242.3 151 72.2
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 5.1e-62 241.5 172 64.5
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 8.8e-62 240.7 181 61.9
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 2.5e-61 239.2 168 67.3
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 2.5e-61 239.2 168 67.3
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 3.3e-61 238.8 187 61.5
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 3.3e-61 238.8 187 61.5
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 4.3e-61 238.4 156 69.2
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 2.8e-60 235.7 173 63.0
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 1.1e-59 233.8 176 60.8
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 1.4e-59 233.4 180 60.6
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 4.1e-59 231.9 176 59.1
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 9.1e-59 230.7 176 58.0
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 4.5e-58 228.4 157 65.6
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 5.9e-58 228.0 167 62.9
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.4e-56 223.4 154 68.2
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 1.8e-54 216.5 177 56.5
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 5.1e-54 214.9 154 63.6
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 6.7e-54 214.5 164 59.8
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 9.1e-51 204.1 160 57.5
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 2.9e-49 199.1 174 53.4
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 8.8e-46 187.6 183 47.0
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 9.7e-45 184.1 178 47.8
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 2.2e-44 183.0 180 46.1
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 2.8e-44 182.6 160 53.1
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 8.2e-44 181.0 131 61.1
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.3e-41 173.7 182 46.2
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 9.7e-37 157.5 138 55.1
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 2.4e-35 152.9 177 44.1
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.8e-27 126.7 133 50.4
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 3.7e-20 102.4 183 38.3
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 3.7e-20 102.4 175 34.3
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 4.9e-20 102.1 156 38.5
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 3.1e-19 99.4 77 63.6
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.2e-15 87.4 59 57.6
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 2.4e-11 73.2 99 41.4
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 1.2e-07 60.8 148 32.4
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 3.6e-07 59.3 162 28.4
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 1.4e-06 57.4 153 29.4
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 1.8e-06 57.0 154 28.6
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 1.8e-06 57.0 153 29.4
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 2.3e-06 56.6 159 28.9
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 4.0e-06 55.8 148 29.7
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 4.0e-06 55.8 148 29.7
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 4.0e-06 55.8 148 29.7
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 4.0e-06 55.8 154 27.9
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 4.0e-06 55.8 180 30.0
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 4.0e-06 55.8 154 29.9
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 5.2e-06 55.5 147 29.3
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 5.2e-06 55.5 159 28.9
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 5.2e-06 55.5 159 28.9
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 5.2e-06 55.5 159 28.9
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 6.8e-06 55.1 148 29.7
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 6.8e-06 55.1 157 28.0
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 8.9e-06 54.7 157 27.4
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 8.9e-06 54.7 154 27.9
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 8.9e-06 54.7 154 27.9
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 8.9e-06 54.7 151 27.8
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 8.9e-06 54.7 161 27.3


User provided reference genes

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