Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 7.6e-266 919.8 437 100.0
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 1.6e-218 762.7 439 83.4
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 1.1e-216 756.5 439 82.2
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 5.5e-216 754.2 440 81.8
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 1.5e-192 676.4 440 74.5
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 7.5e-189 664.1 438 73.5
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 6.4e-180 634.4 460 69.1
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 1.2e-175 620.2 453 67.8
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 3.1e-174 615.5 453 67.3
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 1.4e-166 590.1 420 69.3
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.0e-148 530.8 380 70.5
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 4.2e-147 525.4 447 60.2
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 2.1e-146 523.1 437 60.2
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 2.7e-146 522.7 448 60.0
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 2.0e-141 506.5 441 59.4
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.3e-137 493.0 449 57.0
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 3.0e-137 492.7 444 58.3
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 8.7e-137 491.1 449 57.2
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 1.5e-136 490.3 439 56.7
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 2.5e-136 489.6 452 55.8
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.3e-136 488.8 449 56.6
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 5.7e-136 488.4 438 56.4
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 1.3e-135 487.3 440 58.2
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 6.9e-134 481.5 451 56.5
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 9.0e-134 481.1 469 54.6
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.2e-133 480.7 451 56.3
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.5e-133 480.3 449 55.0
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.5e-133 480.3 449 55.0
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 2.0e-133 479.9 460 55.2
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 7.7e-133 478.0 465 55.3
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 1.0e-132 477.6 460 53.7
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 3.8e-132 475.7 449 56.3
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 8.5e-132 474.6 459 53.8
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 1.2e-130 470.7 486 52.1
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 1.8e-129 466.8 441 57.1
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 5.1e-129 465.3 450 53.1
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 6.7e-129 464.9 452 53.1
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.5e-128 463.0 449 54.3
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 1.3e-127 460.7 443 54.4
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 6.3e-127 458.4 438 54.3
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 6.3e-127 458.4 438 54.3
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 6.3e-127 458.4 366 62.6
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 3.1e-126 456.1 461 53.4
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 3.1e-126 456.1 465 52.0
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.2e-125 454.1 450 53.6
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 1.0e-124 451.1 370 60.8
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 5.0e-124 448.7 366 60.1
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 9.4e-123 444.5 442 52.9
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 2.7e-122 443.0 456 52.4
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 4.7e-122 442.2 473 51.2
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 5.1e-121 438.7 373 59.8
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 5.1e-121 438.7 475 49.5
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 6.7e-121 438.3 372 59.1
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 6.3e-119 431.8 437 52.2
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 3.1e-118 429.5 475 49.1
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 7.7e-117 424.9 452 51.1
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.9e-116 422.9 453 48.6
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 8.5e-116 421.4 452 48.2
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 9.4e-115 417.9 458 48.7
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 4.7e-114 415.6 452 48.0
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 6.1e-114 415.2 377 58.9
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 1.5e-112 410.6 384 56.2
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 6.3e-111 405.2 451 48.1
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.4e-110 404.1 450 48.0
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 1.8e-110 403.7 448 50.7
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 4.1e-110 402.5 454 47.4
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 7.0e-110 401.7 452 47.1
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 7.7e-109 398.3 442 49.8
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.8e-108 396.0 451 47.0
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 7.2e-107 391.7 445 49.7
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 9.4e-107 391.3 363 54.8
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 4.7e-106 389.0 468 45.5
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 6.1e-106 388.7 429 47.6
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 6.1e-106 388.7 469 45.4
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.8e-105 387.1 462 45.5
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 3.0e-105 386.3 370 56.2
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 2.6e-104 383.3 464 45.9
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 5.7e-104 382.1 451 46.1
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.3e-103 380.9 457 48.4
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 3.7e-103 379.4 428 49.3
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 8.3e-103 378.3 442 47.1
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 1.4e-102 377.5 367 53.1
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 9.1e-102 374.8 500 43.2
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 2.0e-101 373.6 307 61.6
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 2.2e-100 370.2 366 52.2
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 1.1e-99 367.9 444 48.2
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 5.5e-99 365.5 444 47.5
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 5.5e-99 365.5 442 46.6
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 6.1e-98 362.1 439 47.6
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 4.0e-97 359.4 442 46.8
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.5e-96 357.5 472 43.4
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 2.0e-96 357.1 439 44.2
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 1.3e-95 354.4 440 44.8
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 6.3e-95 352.1 443 46.3
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 1.1e-94 351.3 445 46.5
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 2.4e-94 350.1 367 50.1
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 5.4e-94 349.0 444 46.6
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 2.9e-92 343.2 446 47.3
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 5.5e-91 339.0 444 46.8
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 4.9e-87 325.9 532 39.3
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.1e-82 308.9 438 42.5
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.4e-81 307.8 339 49.6
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 8.3e-79 298.5 456 42.3
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 8.3e-79 298.5 283 53.7
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 8.3e-79 298.5 343 49.3
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 8.6e-76 288.5 432 40.7
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 2.3e-73 280.4 358 45.5
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 3.4e-72 276.6 268 54.5
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.4e-72 276.2 424 39.2
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.2e-70 270.0 406 38.2
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.6e-69 267.7 268 52.6
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 2.1e-69 267.3 327 46.8
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.6e-66 257.7 428 35.7
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 4.4e-64 249.6 205 63.9
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 3.7e-63 246.5 495 33.3
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 8.1e-58 228.8 243 49.0
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 1.1e-57 228.4 548 29.9
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.3e-52 211.5 376 36.4
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 4.3e-51 206.5 143 66.4
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 3.2e-46 190.3 491 30.3
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 1.7e-44 184.5 274 42.3
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.1e-41 175.3 182 47.8
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-41 174.5 151 54.3
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 4.2e-38 163.3 146 54.8
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.5e-38 162.9 155 51.6
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 8.7e-28 129.0 94 62.8
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 8.7e-28 129.0 215 37.7
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 5.7e-27 126.3 85 69.4
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 7.6e-24 115.9 146 41.8
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 3.4e-16 90.5 150 36.7
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 5.5e-14 83.2 58 69.0
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 9.7e-11 72.4 69 50.7
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 1.1e-09 68.9 52 55.8
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 1.4e-09 68.6 99 37.4
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 3.1e-09 67.4 44 70.5
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 1.4e-06 58.5 157 29.9


User provided reference genes

Program Settings