Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05504_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 2.5e-203 711.8 352 100.0
Ca_05507_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 9.5e-150 533.9 264 99.2
Medtr0025s0060 Medicago truncatula HOM05D001607 ORTHO05D001893 4.3e-142 508.4 279 88.5
TPR.G8164 Trifolium pratense HOM05D001607 ORTHO05D001893 1.2e-139 500.4 279 87.1
Glyma.16G182500 Glycine max HOM05D001607 ORTHO05D001893 9.8e-139 497.3 270 87.0
Glyma.09G137200 Glycine max HOM05D001607 ORTHO05D001893 6.4e-138 494.6 270 86.7
Lj2g0000053 Lotus japonicus HOM05D001607 ORTHO05D001893 3.5e-136 488.8 279 84.2
Lalb_Chr19g0130771 Lupinus albus HOM05D001607 ORTHO05D001893 5.6e-134 481.5 279 81.7
Phvul.004G114200 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 9.5e-134 480.7 270 85.2
VMungo0464G1130 Vigna mungo HOM05D001607 ORTHO05D001893 1.2e-131 473.8 279 81.7
arahy.Tifrunner.gnm1.ann1.2YSW8E Arachis hypogaea HOM05D001607 ORTHO05D001893 5.4e-129 464.9 270 81.5
arahy.Tifrunner.gnm1.ann1.M3PRP5 Arachis hypogaea HOM05D001607 ORTHO05D001893 7.1e-129 464.5 270 81.9
Lj5g0010480 Lotus japonicus HOM05D001607 ORTHO05D001893 3.3e-126 455.7 287 74.2
Medtr1g101030 Medicago truncatula HOM05D001607 ORTHO05D001893 4.7e-125 451.8 296 72.3
arahy.Tifrunner.gnm1.ann1.CMMP9X Arachis hypogaea HOM05D001607 ORTHO05D001893 6.2e-125 451.4 288 72.9
arahy.Tifrunner.gnm1.ann1.GK85WT Arachis hypogaea HOM05D001607 ORTHO05D001893 1.4e-124 450.3 288 72.6
Ca_10751_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 9.9e-123 444.1 296 71.6
Glyma.10G234500 Glycine max HOM05D001607 ORTHO05D001893 3.7e-122 442.2 311 68.5
COL.COLO4_14332 Corchorus olitorius HOM05D001607 ORTHO05D001893 4.9e-122 441.8 270 75.2
Potri.012G142200 Populus trichocarpa HOM05D001607 ORTHO05D001893 8.4e-122 441.0 273 75.1
Psat6g198240 Pisum sativum HOM05D001607 ORTHO05D001893 1.9e-121 439.9 311 67.8
Gorai.007G011200 Gossypium raimondii HOM05D001607 ORTHO05D001893 3.2e-121 439.1 279 73.5
Sabra12G0106800 Salix brachista HOM05D001607 ORTHO05D001893 3.2e-121 439.1 273 74.4
Lalb_Chr02g0141081 Lupinus albus HOM05D001607 ORTHO05D001893 1.2e-120 437.2 289 73.4
Gohir.D11G009700 Gossypium hirsutum HOM05D001607 ORTHO05D001893 1.6e-120 436.8 279 73.1
PGR042G0514 Punica granatum HOM05D001607 ORTHO05D001893 1.6e-120 436.8 279 72.4
TPR.G26981 Trifolium pratense HOM05D001607 ORTHO05D001893 1.6e-120 436.8 288 71.5
Gorai.004G118300 Gossypium raimondii HOM05D001607 ORTHO05D001893 3.5e-120 435.6 279 72.0
Gohir.A08G099300 Gossypium hirsutum HOM05D001607 ORTHO05D001893 6.0e-120 434.9 279 72.0
Potri.015G145300 Populus trichocarpa HOM05D001607 ORTHO05D001893 2.3e-119 433.0 273 72.2
GSVIVG01028929001 Vitis vinifera HOM05D001607 ORTHO05D001893 3.9e-119 432.2 279 71.3
Gohir.A11G010500 Gossypium hirsutum HOM05D001607 ORTHO05D001893 5.1e-119 431.8 279 72.0
TWI39G1280 Tripterygium wilfordii HOM05D001607 ORTHO05D001893 5.1e-119 431.8 279 70.6
MD07G1272600 Malus domestica HOM05D001607 ORTHO05D001893 1.5e-118 430.3 279 69.2
Duzib205G1855 Durio zibethinus HOM05D001607 ORTHO05D001893 1.9e-118 429.9 279 71.0
FvH4_7g29630 Fragaria vesca HOM05D001607 ORTHO05D001893 1.9e-118 429.9 279 71.0
FAN06G1924 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.9e-118 429.9 279 71.0
FAN06G4239 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.9e-118 429.9 279 71.0
VMungo0720G1584 Vigna mungo HOM05D001607 ORTHO05D001893 2.5e-118 429.5 288 71.2
Prupe.2G295900 Prunus persica HOM05D001607 ORTHO05D001893 3.3e-118 429.1 279 68.5
Thecc.03G178600 Theobroma cacao HOM05D001607 ORTHO05D001893 3.3e-118 429.1 279 71.7
Duzib068G0651 Durio zibethinus HOM05D001607 ORTHO05D001893 5.6e-118 428.3 279 70.6
FAN03G1056 Fragaria x ananassa HOM05D001607 ORTHO05D001893 5.6e-118 428.3 279 70.3
Manes.06G148500 Manihot esculenta HOM05D001607 ORTHO05D001893 7.3e-118 427.9 279 70.6
Phvul.007G071600 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 7.3e-118 427.9 296 69.3
CiPaw.04G071800 Carya illinoinensis HOM05D001607 ORTHO05D001893 1.6e-117 426.8 273 71.1
MD01G1203100 Malus domestica HOM05D001607 ORTHO05D001893 1.6e-117 426.8 279 68.5
FAN01G0648 Fragaria x ananassa HOM05D001607 ORTHO05D001893 3.6e-117 425.6 279 69.9
FAN03G1039 Fragaria x ananassa HOM05D001607 ORTHO05D001893 4.7e-117 425.2 279 69.9
Cfa022712 Carpinus fangiana HOM05D001607 ORTHO05D001893 6.2e-117 424.9 279 71.0
Eucgr.A02780 Eucalyptus grandis HOM05D001607 ORTHO05D001893 8.1e-117 424.5 279 71.0
Dinv28425 Davidia involucrata HOM05D001607 ORTHO05D001893 1.1e-116 424.1 279 71.0
Actinidia25880 Actinidia chinensis HOM05D001607 ORTHO05D001893 1.4e-116 423.7 279 71.0
Ciclev10004167m.g Citrus clementina HOM05D001607 ORTHO05D001893 3.1e-116 422.5 279 71.3
CSS0006931 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 4.0e-116 422.2 279 70.6
Haze_13673 Corylus avellana HOM05D001607 ORTHO05D001893 6.8e-116 421.4 279 70.3
RcHm_v2.0_Chr1g0377641 Rosa chinensis HOM05D001607 ORTHO05D001893 1.2e-115 420.6 279 69.5
CANSAT21G1423 Cannabis sativa HOM05D001607 ORTHO05D001893 1.5e-115 420.2 279 69.2
Eucgr.A02778 Eucalyptus grandis HOM05D001607 ORTHO05D001893 1.5e-115 420.2 282 70.2
CiPaw.03G107800 Carya illinoinensis HOM05D001607 ORTHO05D001893 3.4e-115 419.1 272 70.6
Actinidia34121 Actinidia chinensis HOM05D001607 ORTHO05D001893 4.4e-115 418.7 279 71.0
Sp7g18940 Schrenkiella parvula HOM05D001607 ORTHO05D001893 4.4e-115 418.7 279 68.8
Sc25g0000580 Simmondsia chinensis HOM05D001607 ORTHO05D001893 5.8e-115 418.3 279 68.8
THA.LOC104812206 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 9.9e-115 417.5 298 64.8
FAN10G2541 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.3e-114 417.2 294 66.3
ClCG01G004440 Citrullus lanatus HOM05D001607 ORTHO05D001893 2.2e-114 416.4 271 69.4
MELO3C005470.2 Cucumis melo HOM05D001607 ORTHO05D001893 3.8e-114 415.6 279 67.7
SGA_v2.0_scaffold44G16733 Striga asiatica HOM05D001607 ORTHO05D001893 3.8e-114 415.6 270 67.4
Nitab4.5_0001842g0120 Nicotiana tabacum HOM05D001607 ORTHO05D001893 4.9e-114 415.2 288 68.1
Aqoxy1G00239 Aquilegia oxysepala HOM05D001607 ORTHO05D001893 6.4e-114 414.8 293 65.9
BolC7t45597H Brassica oleracea HOM05D001607 ORTHO05D001893 6.4e-114 414.8 279 68.8
BraA03t14327Z Brassica rapa HOM05D001607 ORTHO05D001893 6.4e-114 414.8 279 68.8
FAN10G1529 Fragaria x ananassa HOM05D001607 ORTHO05D001893 6.4e-114 414.8 294 66.0
Nitab4.5_0005845g0050 Nicotiana tabacum HOM05D001607 ORTHO05D001893 8.4e-114 414.5 288 68.1
A03p52520 Brassica napus HOM05D001607 ORTHO05D001893 1.9e-113 413.3 279 68.1
CsaV3_5G004660 Cucumis sativus L. HOM05D001607 ORTHO05D001893 1.9e-113 413.3 279 67.4
BcaNung05068 Brassica carinata HOM05D001607 ORTHO05D001893 3.2e-113 412.5 279 68.1
C07p50960 Brassica napus HOM05D001607 ORTHO05D001893 3.2e-113 412.5 279 68.1
Lsat_1_v5_gn_8_8420 Lactuca sativa HOM05D001607 ORTHO05D001893 3.2e-113 412.5 273 68.9
Sopen03g004440 Solanum pennellii HOM05D001607 ORTHO05D001893 3.2e-113 412.5 279 69.2
Aa31LG6G2920 Aethionema arabicum HOM05D001607 ORTHO05D001893 5.4e-113 411.8 273 69.2
TAR375G0166 Trochodendron aralioides HOM05D001607 ORTHO05D001893 5.4e-113 411.8 279 69.5
Nn1g01507 Nelumbo nucifera HOM05D001607 ORTHO05D001893 7.1e-113 411.4 279 69.9
Migut.F00330 Erythranthe guttata HOM05D001607 ORTHO05D001893 9.3e-113 411.0 288 64.2
CARHR227400 Cardamine hirsuta HOM05D001607 ORTHO05D001893 1.2e-112 410.6 279 67.7
AL7G33300 Arabidopsis lyrata HOM05D001607 ORTHO05D001893 2.1e-112 409.8 279 67.4
Rhsim03G0187200 Rhododendron simsii HOM05D001607 ORTHO05D001893 3.5e-112 409.1 279 68.1
ECA233G5223 Erigeron canadensis HOM05D001607 ORTHO05D001893 4.6e-112 408.7 273 68.9
AT4G20850 Arabidopsis thaliana HOM05D001607 ORTHO05D001893 7.8e-112 407.9 270 68.1
Sed0028131 Sechium edule HOM05D001607 ORTHO05D001893 7.8e-112 407.9 279 67.4
THA.LOC104824854 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 1.7e-111 406.8 298 62.8
BcaNung04147 Brassica carinata HOM05D001607 ORTHO05D001893 2.3e-111 406.4 279 66.3
DCAR_001509 Daucus carota HOM05D001607 ORTHO05D001893 2.3e-111 406.4 279 66.3
HanXRQChr10g0304171 Helianthus annuus HOM05D001607 ORTHO05D001893 2.3e-111 406.4 273 68.5
BcaC09g51300 Brassica carinata HOM05D001607 ORTHO05D001893 3.9e-111 405.6 279 66.3
A01p12270 Brassica napus HOM05D001607 ORTHO05D001893 3.9e-111 405.6 279 66.3
C01p14680 Brassica napus HOM05D001607 ORTHO05D001893 3.9e-111 405.6 279 66.3
BolC1t01419H Brassica oleracea HOM05D001607 ORTHO05D001893 3.9e-111 405.6 279 66.3
BraA01t01171Z Brassica rapa HOM05D001607 ORTHO05D001893 3.9e-111 405.6 279 66.3
Atru.chr1.433 Acer truncatum HOM05D001607 ORTHO05D001893 5.1e-111 405.2 279 68.8
THA.LOC104824860 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 5.1e-111 405.2 300 63.3
vmacro06666 Vaccinium macrocarpon HOM05D001607 ORTHO05D001893 1.9e-110 403.3 279 67.7
Carub.0007s2059 Capsella rubella HOM05D001607 ORTHO05D001893 2.5e-110 402.9 279 66.3
MBI18_g25519_MAGBIO Magnolia biondii HOM05D001607 ORTHO05D001893 1.6e-109 400.2 279 65.9
SalBow4G1573 Salvia bowleyana HOM05D001607 ORTHO05D001893 1.8e-108 396.7 288 63.2
Hund04758 Selenicereus undatus HOM05D001607 ORTHO05D001893 5.3e-108 395.2 288 65.3
MSTRG.27107 Avicennia marina HOM05D001607 ORTHO05D001893 1.2e-107 394.0 270 64.8
EL10Ac3g05618 Beta vulgaris HOM05D001607 ORTHO05D001893 2.6e-107 392.9 279 66.7
AUR62021171 Chenopodium quinoa HOM05D001607 ORTHO05D001893 7.6e-107 391.3 279 65.2
PSO782G3230 Papaver somniferum HOM05D001607 ORTHO05D001893 1.3e-106 390.6 270 65.9
AUR62015965 Chenopodium quinoa HOM05D001607 ORTHO05D001893 2.9e-106 389.4 279 64.9
PSO478G2555 Papaver somniferum HOM05D001607 ORTHO05D001893 3.8e-106 389.0 270 65.2
unitig_46.g18794 Utricularia gibba HOM05D001607 ORTHO05D001893 1.2e-104 384.0 274 64.6
Os02g0664300 Oryza sativa ssp. japonica HOM05D001607 ORTHO05D001893 2.7e-104 382.9 270 64.1
ATR0680G301 Amborella trichopoda HOM05D001607 ORTHO05D001893 7.9e-104 381.3 279 63.8
arahy.Tifrunner.gnm1.ann1.I8PQ41 Arachis hypogaea HOM05D001607 ORTHO05D001893 1.5e-102 377.1 231 74.9
SGA_v2.0_scaffold60G21061 Striga asiatica HOM05D001607 ORTHO05D001893 2.8e-101 372.9 279 60.9
Zm00001eb249900 Zea mays HOM05D001607 ORTHO05D001893 2.8e-101 372.9 273 63.0
arahy.Tifrunner.gnm1.ann1.L95KH7 Arachis hypogaea HOM05D001607 ORTHO05D001893 6.2e-101 371.7 230 74.3
Ah.07g207010 Amaranthus hybridus HOM05D001607 ORTHO05D001893 1.1e-100 370.9 272 63.6
HPP92_011359 Vanilla planifolia HOM05D001607 ORTHO05D001893 1.5e-99 367.1 273 60.1
Sopen03g004450 Solanum pennellii HOM05D001607 ORTHO05D001893 1.8e-95 353.6 243 67.1
Lj1A999G29 Lonicera japonica HOM05D001607 ORTHO05D001893 8.7e-95 351.3 272 62.9
arahy.Tifrunner.gnm1.ann1.HZL4S5 Arachis hypogaea HOM05D001607 ORTHO05D001893 4.8e-93 345.5 277 65.3
Thhalv10024222m.g Eutrema salsugineum HOM05D001607 ORTHO05D001893 4.8e-93 345.5 245 65.3
Peaxi162Scf00444g00717 Petunia axillaris HOM05D001607 ORTHO05D001893 2.1e-88 330.1 212 71.2
Pp3c7_23000 Physcomitrium patens HOM05D001607 ORTHO05D001893 9.6e-86 321.2 273 54.9
CAN.G307.24 Capsicum annuum HOM05D001607 ORTHO05D001893 9.0e-84 314.7 210 69.0
SMO367G0172 Selaginella moellendorffii HOM05D001607 ORTHO05D001893 7.6e-83 311.6 290 51.0
AagrBONN_evm.TU.Sc2ySwM_344.3434 Anthoceros agrestis HOM05D001607 ORTHO05D001893 1.9e-81 307.0 273 49.8
Pp3c2_32420 Physcomitrium patens HOM05D001607 ORTHO05D001893 2.7e-80 303.1 270 51.5
HPP92_011358 Vanilla planifolia HOM05D001607 ORTHO05D001893 3.9e-79 299.3 243 56.4
Mapoly0069s0029 Marchantia polymorpha HOM05D001607 ORTHO05D001893 2.2e-77 293.5 270 50.0
Psat0s3405g0040 Pisum sativum HOM05D001607 ORTHO05D001893 3.7e-77 292.7 180 79.4
Glyma.09G137500 Glycine max HOM05D001607 ORTHO05D001893 6.3e-69 265.4 162 80.2
arahy.Tifrunner.gnm1.ann1.7Y045D Arachis hypogaea HOM05D001607 ORTHO05D001893 7.7e-67 258.5 156 73.1
Cpa.g.sc107.64 Carica papaya HOM05D001607 ORTHO05D001893 2.9e-66 256.5 164 68.9
Psat0s3405g0080 Pisum sativum HOM05D001607 ORTHO05D001893 3.0e-55 219.9 128 85.9
SEGI_13029 Sequoiadendron giganteum HOM05D001607 ORTHO05D001893 4.5e-51 206.1 182 50.0
CSS0037491 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 4.5e-43 179.5 132 66.7
Gohir.D08G110716 Gossypium hirsutum HOM05D001607 ORTHO05D001893 5.5e-41 172.6 98 75.5
Rhsim05G0128400 Rhododendron simsii HOM05D001607 ORTHO05D001893 4.5e-35 152.9 163 49.1
THA.LOC104818559 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 1.9e-33 147.5 96 63.5
Cre16.g675350 Chlamydomonas reinhardtii HOM05D001607 ORTHO05D001893 5.2e-31 139.4 322 30.1
CSS0024839 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 2.0e-30 137.5 97 60.8
SEGI_09189 Sequoiadendron giganteum HOM05D001607 ORTHO05D001893 1.1e-28 131.7 109 56.9
SEGI_12683 Sequoiadendron giganteum HOM05D001607 ORTHO05D001893 1.1e-28 131.7 109 56.9
PRCOL_00005219 Prasinoderma coloniale HOM05D001607 ORTHO05D001893 4.6e-27 126.3 269 32.3
Nitab4.5_0003131g0040 Nicotiana tabacum HOM05D001607 ORTHO05D001893 1.3e-26 124.8 132 49.2
CSS0019814 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 1.9e-20 104.4 62 72.6
CDE08G0131 Ceratophyllum demersum HOM05D001607 ORTHO05D001893 3.9e-18 96.7 85 49.4
MELO3C027008.2 Cucumis melo HOM05D001607 ORTHO05D001893 1.9e-12 77.8 56 67.9
RhsimUnG0162600 Rhododendron simsii HOM05D002175 ORTHO05D002303 5.6e-09 66.2 112 38.4


User provided reference genes

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