Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.6e-102 377.1 214 100.0
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.6e-102 377.1 214 100.0
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 1.4e-47 195.3 214 47.7
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 1.8e-39 168.3 214 44.4
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 5.9e-38 163.3 214 42.5
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 6.5e-37 159.8 214 54.2
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 4.6e-35 153.7 214 53.7
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 7.4e-33 146.4 214 52.3
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 5.9e-30 136.7 134 53.7
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 1.3e-29 135.6 181 44.2
Glyma.14G184300 Glycine max HOM05D006739 ORTHO05D008402 6.3e-24 116.7 174 40.2
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 3.1e-23 114.4 143 48.3
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.2e-22 112.5 189 53.4
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 1.2e-22 112.5 199 46.7
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 1.6e-22 112.1 143 46.9
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 8.5e-21 106.3 215 44.7
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 2.7e-19 101.3 123 47.2
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 6.1e-19 100.1 167 41.3
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 6.7e-18 96.7 139 45.3
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 1.1e-17 95.9 93 45.2
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.1e-17 95.9 123 48.0
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 2.0e-17 95.1 144 43.8
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 2.0e-17 95.1 189 46.6
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 3.3e-17 94.4 123 48.0
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 2.8e-16 91.3 122 46.7
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 6.3e-16 90.1 125 48.8
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 1.8e-15 88.6 212 43.9
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 9.1e-15 86.3 133 42.9
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 2.0e-14 85.1 182 45.6
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 3.5e-14 84.3 149 38.3
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 1.0e-13 82.8 134 39.6
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 6.5e-13 80.1 125 43.2
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 8.5e-13 79.7 101 45.5
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 1.5e-12 79.0 111 41.4
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 3.2e-12 77.8 189 42.3
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 5.5e-12 77.0 118 39.0
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 9.4e-12 76.3 127 39.4
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 1.6e-11 75.5 104 44.2
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 3.6e-11 74.3 124 40.3
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 3.6e-11 74.3 142 49.3
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 4.7e-11 73.9 94 44.7
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 4.7e-11 73.9 158 35.4
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 6.1e-11 73.6 110 40.9
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 6.1e-11 73.6 188 42.6
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 8.0e-11 73.2 91 46.2
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 1.0e-10 72.8 93 46.2
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 1.0e-10 72.8 188 42.0
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 1.0e-10 72.8 104 41.3
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 1.8e-10 72.0 110 40.0
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 1.8e-10 72.0 134 35.8
HPP92_004376 Vanilla planifolia HOM05D006739 ORTHO05D008402 1.8e-10 72.0 85 47.1
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 2.3e-10 71.6 104 42.3
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 2.3e-10 71.6 94 45.7
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 3.0e-10 71.2 86 46.5
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 4.0e-10 70.9 108 40.7
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 4.0e-10 70.9 92 44.6
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 5.2e-10 70.5 107 41.1
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 5.2e-10 70.5 107 41.1
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 5.2e-10 70.5 134 35.8
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 6.8e-10 70.1 135 36.3
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 8.8e-10 69.7 86 46.5
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 8.8e-10 69.7 125 37.6
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 8.8e-10 69.7 98 41.8
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 8.8e-10 69.7 103 40.8
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.2e-09 69.3 92 45.7
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.2e-09 69.3 92 45.7
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.2e-09 69.3 92 45.7
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 1.2e-09 69.3 103 40.8
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 1.2e-09 69.3 198 42.4
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 1.2e-09 69.3 124 33.9
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 1.5e-09 68.9 91 42.9
Cc10_g08260 Coffea canephora HOM05D008425 ORTHO05D010555 1.5e-09 68.9 109 58.7
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 2.0e-09 68.6 103 38.8
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.0e-09 68.6 209 27.3
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 2.6e-09 68.2 84 45.2
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 2.6e-09 68.2 154 41.6
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 2.6e-09 68.2 96 43.8
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 4.4e-09 67.4 96 39.6
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 4.4e-09 67.4 123 38.2
Oeu012210.1 Olea europaea HOM05D006739 ORTHO05D008402 4.4e-09 67.4 74 47.3
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 4.4e-09 67.4 102 39.2
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 5.7e-09 67.0 98 40.8
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 7.5e-09 66.6 74 45.9
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 7.5e-09 66.6 102 39.2
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 9.8e-09 66.2 103 38.8
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 9.8e-09 66.2 202 39.1
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 9.8e-09 66.2 126 35.7
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 1.3e-08 65.9 140 46.4
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 1.3e-08 65.9 136 34.6
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 1.7e-08 65.5 102 39.2
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 2.2e-08 65.1 80 46.2
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 2.8e-08 64.7 144 45.1
Cpa.g.sc177.10 Carica papaya HOM05D006739 ORTHO05D008402 3.7e-08 64.3 77 79.2
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 3.7e-08 64.3 98 38.8
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 3.7e-08 64.3 105 37.1
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 4.8e-08 63.9 145 36.6
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 6.3e-08 63.5 123 36.6
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 6.3e-08 63.5 123 36.6
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 6.3e-08 63.5 99 39.4
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 8.3e-08 63.2 80 38.8
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 1.1e-07 62.8 81 43.2
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 1.1e-07 62.8 72 47.2
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.1e-07 62.8 117 35.9
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 1.1e-07 62.8 91 36.3
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 1.1e-07 62.8 96 36.5
Actinidia19612 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.4e-07 62.4 109 55.0
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 1.4e-07 62.4 53 54.7
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 1.4e-07 62.4 81 44.4
Lj4P741T26 Lonicera japonica HOM05D006739 ORTHO05D008402 1.4e-07 62.4 65 46.2
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 1.4e-07 62.4 143 33.6
Dinv22007 Davidia involucrata HOM05D006739 ORTHO05D008402 1.8e-07 62.0 109 52.3
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 2.4e-07 61.6 75 44.0
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 2.4e-07 61.6 75 44.0
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 3.1e-07 61.2 83 41.0
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 4.1e-07 60.8 53 52.8
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 4.1e-07 60.8 75 44.0
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 4.1e-07 60.8 75 44.0
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 4.1e-07 60.8 53 52.8
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 4.1e-07 60.8 139 46.0
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 5.4e-07 60.5 53 52.8
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 5.4e-07 60.5 64 45.3
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 7.0e-07 60.1 64 45.3
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 7.0e-07 60.1 64 45.3
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 9.1e-07 59.7 94 38.3
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 9.1e-07 59.7 55 50.9
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 1.2e-06 59.3 127 35.4
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 1.2e-06 59.3 61 49.2
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 1.2e-06 59.3 52 51.9
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 1.2e-06 59.3 52 51.9
arahy.Tifrunner.gnm1.ann1.LQ1LZI Arachis hypogaea HOM05D007409 ORTHO05D009264 1.6e-06 58.9 100 34.0
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 1.6e-06 58.9 92 43.5
MBI16_g14339_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 1.6e-06 58.9 109 53.2
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 1.6e-06 58.9 61 50.8
AL5G10840 Arabidopsis lyrata HOM05D008835 ORTHO05D011094 2.0e-06 58.5 119 26.9
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 2.0e-06 58.5 114 36.8
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 2.0e-06 58.5 80 32.5
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 2.7e-06 58.2 39 61.5
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 2.7e-06 58.2 69 44.9
GSVIVG01012774001 Vitis vinifera HOM05D007390 ORTHO05D009114 2.7e-06 58.2 99 31.3
Aa31LG2G8150 Aethionema arabicum HOM05D008835 ORTHO05D011094 3.5e-06 57.8 94 26.6
Ciclev10004237m.g Citrus clementina HOM05D003975 ORTHO05D009762 3.5e-06 57.8 103 31.1
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 3.5e-06 57.8 39 61.5
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 3.5e-06 57.8 102 35.3
CANSAT54G0748 Cannabis sativa HOM05D007536 ORTHO05D009390 4.5e-06 57.4 104 29.8
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 4.5e-06 57.4 195 40.0
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 4.5e-06 57.4 85 32.9
AT2G01740 Arabidopsis thaliana HOM05D008835 ORTHO05D011094 5.9e-06 57.0 94 27.7
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 5.9e-06 57.0 80 40.0
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 5.9e-06 57.0 91 39.6
Sp2g13190 Schrenkiella parvula HOM05D008835 ORTHO05D011094 5.9e-06 57.0 94 26.6
C04p43710 Brassica napus HOM05D007456 ORTHO05D009411 7.7e-06 56.6 94 31.9
Thhalv10003932m.g Eutrema salsugineum HOM05D008835 ORTHO05D011094 7.7e-06 56.6 79 32.9
Lj4P741T30 Lonicera japonica HOM05D006739 ORTHO05D008402 7.7e-06 56.6 37 70.3
Nn4g26594 Nelumbo nucifera HOM05D008835 ORTHO05D011094 7.7e-06 56.6 77 31.2
Zm00001eb151420 Zea mays HOM05D037632 ORTHO05D009568 7.7e-06 56.6 69 40.6


User provided reference genes

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