Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.2e-169 599.7 294 100.0
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 5.5e-151 537.7 265 99.6
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 2.3e-80 303.1 754 33.2
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 1.9e-79 300.1 751 32.9
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 4.0e-77 292.4 754 32.4
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 1.3e-75 287.3 743 32.0
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 1.9e-74 283.5 700 32.6
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 2.7e-73 279.6 746 31.6
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 2.5e-71 273.1 752 31.0
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 6.9e-69 265.0 754 30.2
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 1.2e-68 264.2 665 32.2
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 1.7e-67 260.4 754 30.2
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 1.6e-65 253.8 740 30.0
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 2.7e-65 253.1 727 29.6
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 1.3e-64 250.8 609 32.3
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 2.1e-62 243.4 286 51.7
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 3.1e-61 239.6 766 29.8
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 5.3e-61 238.8 739 28.6
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 1.2e-60 237.7 769 29.6
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 1.5e-60 237.3 749 28.8
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 7.6e-60 235.0 749 28.7
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 2.2e-59 233.4 734 28.9
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 1.2e-57 227.6 755 27.8
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 1.6e-57 227.3 720 28.9
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 2.7e-57 226.5 731 28.5
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 6.0e-57 225.3 752 28.2
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 7.9e-57 224.9 751 28.1
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 7.9e-57 224.9 748 28.3
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 6.7e-56 221.9 753 29.0
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 2.5e-55 219.9 748 28.6
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 4.3e-55 219.2 745 28.7
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 1.3e-54 217.6 741 27.8
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 1.6e-54 217.2 746 27.6
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 6.2e-54 215.3 746 27.1
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 6.2e-54 215.3 742 28.2
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 8.1e-54 214.9 743 27.7
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 1.8e-53 213.8 765 26.4
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 2.4e-53 213.4 744 27.3
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 3.1e-53 213.0 740 27.4
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 9.0e-53 211.5 740 27.6
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 9.0e-53 211.5 745 27.7
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 5.8e-52 208.8 748 27.8
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 5.8e-52 208.8 748 27.8
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 1.7e-51 207.2 768 27.0
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 1.1e-50 204.5 749 27.2
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 2.4e-50 203.4 758 26.6
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 2.4e-50 203.4 765 26.8
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 2.4e-50 203.4 138 73.9
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 3.2e-50 203.0 722 27.3
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 4.2e-50 202.6 743 26.9
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 5.5e-50 202.2 752 27.1
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 5.5e-50 202.2 740 27.0
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 7.1e-50 201.8 259 51.4
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 7.1e-50 201.8 139 73.4
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.2e-49 201.1 726 26.7
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 3.5e-49 199.5 752 26.6
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 6.0e-49 198.7 750 26.7
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 1.3e-48 197.6 769 26.5
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 3.0e-48 196.4 132 73.5
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 3.0e-48 196.4 733 27.6
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.5e-47 194.1 685 27.9
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 1.9e-47 193.7 738 27.2
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 1.9e-47 193.7 745 26.2
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 4.3e-47 192.6 685 27.7
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 5.6e-47 192.2 757 25.5
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 9.6e-47 191.4 685 27.6
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.8e-46 189.9 756 25.3
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.8e-46 189.9 752 25.4
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 2.8e-46 189.9 244 48.8
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.7e-46 189.5 745 25.4
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 1.8e-45 187.2 147 66.7
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 2.4e-45 186.8 767 25.7
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 5.8e-44 182.2 138 67.4
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 7.6e-44 181.8 246 46.3
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 9.3e-42 174.9 127 70.9
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 2.3e-40 170.2 277 43.0
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 6.7e-40 168.7 735 24.6
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.1e-39 167.9 125 64.0
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 1.5e-39 167.5 738 24.5
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.3e-39 166.4 125 62.4
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 4.3e-39 166.0 135 60.0
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 5.7e-39 165.6 164 54.9
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 5.7e-39 165.6 763 24.6
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 5.7e-39 165.6 763 24.6
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 2.1e-38 163.7 92 84.8
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 4.8e-38 162.5 207 42.5
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 6.3e-38 162.2 760 24.5
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 1.4e-37 161.0 768 23.0
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 1.4e-37 161.0 98 79.6
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 1.8e-37 160.6 118 66.9
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 1.8e-37 160.6 768 23.8
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 4.1e-37 159.5 121 63.6
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 1.2e-36 157.9 118 65.3
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 2.0e-36 157.1 747 24.6
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 5.9e-36 155.6 116 66.4
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 1.3e-35 154.5 116 66.4
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 1.3e-35 154.5 116 66.4
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 1.3e-35 154.5 116 65.5
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 1.3e-35 154.5 124 58.9
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 1.7e-35 154.1 118 62.7
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 1.7e-35 154.1 124 58.9
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 2.2e-35 153.7 169 53.3
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 2.9e-35 153.3 144 55.6
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 1.1e-34 151.4 286 38.5
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 1.4e-34 151.0 135 58.5
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 1.9e-34 150.6 157 53.5
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 5.5e-34 149.1 138 56.5
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 2.7e-33 146.7 112 62.5
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 6.7e-32 142.1 137 52.6
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 6.3e-30 135.6 137 53.3
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 2.0e-28 130.6 102 67.6
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 4.6e-25 119.4 146 47.3
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.3e-19 101.3 125 47.2
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 9.7e-15 85.1 56 73.2
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 3.7e-14 83.2 107 42.1
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 8.2e-14 82.0 107 42.1
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.1e-13 81.6 107 42.1
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.1e-13 81.6 107 42.1
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.7e-11 74.3 135 32.6
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 3.2e-10 70.1 135 33.3
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.2e-10 69.7 135 32.6
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 1.5e-07 61.2 81 37.0
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.0e-07 60.8 105 33.3
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 2.0e-07 60.8 67 47.8
AagrBONN_evm.TU.Sc2ySwM_117.2839 Anthoceros agrestis HOM05D002537 ORTHO05D006869 2.6e-07 60.5 94 36.2
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 4.4e-07 59.7 164 30.5
Zm00001eb084860 Zea mays HOM05D002537 ORTHO05D002751 5.7e-07 59.3 72 38.9
Oeu063117.1 Olea europaea HOM05D003725 ORTHO05D004294 9.7e-07 58.5 150 29.3
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 1.3e-06 58.2 72 38.9
Zm00001eb242030 Zea mays HOM05D002537 ORTHO05D002751 1.3e-06 58.2 72 38.9
Sed0027950 Sechium edule HOM05D002537 ORTHO05D002751 1.7e-06 57.8 78 37.2
Aqoxy1G00445 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 2.2e-06 57.4 105 29.5
PGR102G0822 Punica granatum HOM05D002537 ORTHO05D002751 2.2e-06 57.4 72 36.1
Aa31LG9G13480 Aethionema arabicum HOM05D002537 ORTHO05D002751 2.8e-06 57.0 70 35.7
Os02g0516800 Oryza sativa ssp. japonica HOM05D002537 ORTHO05D002751 2.8e-06 57.0 74 37.8
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 2.8e-06 57.0 119 31.9
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 3.7e-06 56.6 85 37.6
CSS0009758 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 4.8e-06 56.2 72 34.7
CSS0033009 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 4.8e-06 56.2 72 34.7
DCAR_000127 Daucus carota HOM05D002537 ORTHO05D002751 4.8e-06 56.2 82 35.4
DCAR_024631 Daucus carota HOM05D002537 ORTHO05D002751 4.8e-06 56.2 82 35.4
Thecc.03G139900 Theobroma cacao HOM05D002537 ORTHO05D002751 6.3e-06 55.8 72 31.9
Ah.02g131450 Amaranthus hybridus HOM05D002537 ORTHO05D002751 8.2e-06 55.5 93 34.4
RhsimUnG0101800 Rhododendron simsii HOM05D002537 ORTHO05D002751 8.2e-06 55.5 69 34.8


User provided reference genes

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