Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05384_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 4.7e-244 847.4 425 100.0
Ca_25152_v3 Cicer arietinum L. HOM05D002770 ORTHO05D003011 6.4e-84 315.5 192 84.4
Medtr5g065550 Medicago truncatula HOM05D003540 ORTHO05D004012 2.2e-31 141.0 79 88.6
Lj1g0000615 Lotus japonicus HOM05D003540 ORTHO05D004012 4.8e-31 139.8 79 87.3
Psat2g066800 Pisum sativum HOM05D003540 ORTHO05D004012 6.3e-31 139.4 79 88.6
Phvul.008G178700 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 2.0e-29 134.4 79 83.5
Glyma.14G179100 Glycine max HOM05D003540 ORTHO05D004012 5.9e-29 132.9 79 82.3
Glyma.02G211500 Glycine max HOM05D003540 ORTHO05D004012 2.9e-28 130.6 79 81.0
VMungo0647G0300 Vigna mungo HOM05D003540 ORTHO05D004012 2.9e-28 130.6 79 81.0
Medtr4g050530 Medicago truncatula HOM05D002770 ORTHO05D266854 5.5e-27 126.3 167 48.5
Lalb_Chr10g0102641 Lupinus albus HOM05D003540 ORTHO05D004012 3.6e-26 123.6 79 79.7
Lalb_Chr23g0270301 Lupinus albus HOM05D003540 ORTHO05D004012 3.3e-24 117.1 81 74.1
arahy.Tifrunner.gnm1.ann1.Q67T8J Arachis hypogaea HOM05D003540 ORTHO05D004012 5.7e-24 116.3 81 74.1
arahy.Tifrunner.gnm1.ann1.QI1MS0 Arachis hypogaea HOM05D003540 ORTHO05D004012 5.7e-24 116.3 81 74.1
arahy.Tifrunner.gnm1.ann1.41SNZJ Arachis hypogaea HOM05D003540 ORTHO05D004012 9.7e-24 115.5 79 72.2
arahy.Tifrunner.gnm1.ann1.NU78SD Arachis hypogaea HOM05D003540 ORTHO05D004012 9.7e-24 115.5 79 72.2
BcaC06g35396 Brassica carinata HOM05D003540 ORTHO05D004012 3.7e-23 113.6 85 69.4
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 3.7e-23 113.6 85 69.4
Ca_16024_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 3.7e-23 113.6 82 78.0
TPR.G6376 Trifolium pratense HOM05D003540 ORTHO05D004012 8.2e-23 112.5 81 77.8
BcaB07g32485 Brassica carinata HOM05D003540 ORTHO05D004012 1.1e-22 112.1 84 69.0
Lj1g0025059 Lotus japonicus HOM05D003540 ORTHO05D004012 1.1e-22 112.1 78 75.6
Sp1g25000 Schrenkiella parvula HOM05D003540 ORTHO05D004012 1.1e-22 112.1 84 69.0
A08p25340 Brassica napus HOM05D003540 ORTHO05D004012 1.4e-22 111.7 85 68.2
C03p75500 Brassica napus HOM05D003540 ORTHO05D004012 1.8e-22 111.3 84 69.0
BolC3t19806H Brassica oleracea HOM05D003540 ORTHO05D004012 1.8e-22 111.3 84 69.0
Glyma.04G097000 Glycine max HOM05D003540 ORTHO05D004012 1.8e-22 111.3 80 70.0
Gohir.A06G032664 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.8e-22 111.3 83 71.1
BolC5t31494H Brassica oleracea HOM05D003540 ORTHO05D004012 2.4e-22 110.9 93 63.4
AT4G14600 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 4.1e-22 110.2 84 67.9
BcaNung06434 Brassica carinata HOM05D003540 ORTHO05D004012 4.1e-22 110.2 84 67.9
BcaNung06754 Brassica carinata HOM05D003540 ORTHO05D004012 4.1e-22 110.2 84 67.9
BraA08t34486Z Brassica rapa HOM05D003540 ORTHO05D004012 4.1e-22 110.2 84 67.9
Aa31LG5G21170 Aethionema arabicum HOM05D003540 ORTHO05D004012 5.3e-22 109.8 84 66.7
AL7G41530 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 5.3e-22 109.8 84 67.9
BcaC05g26921 Brassica carinata HOM05D003540 ORTHO05D004012 5.3e-22 109.8 84 67.9
C05p27740 Brassica napus HOM05D003540 ORTHO05D004012 5.3e-22 109.8 84 67.9
COL.COLO4_11964 Corchorus olitorius HOM05D003540 ORTHO05D004012 5.3e-22 109.8 83 69.9
Manes.18G062100 Manihot esculenta HOM05D003540 ORTHO05D004012 5.3e-22 109.8 81 69.1
A07p10970 Brassica napus HOM05D003540 ORTHO05D004012 9.1e-22 109.0 81 69.1
BraA07t28888Z Brassica rapa HOM05D003540 ORTHO05D004012 9.1e-22 109.0 81 69.1
Gohir.D06G033200 Gossypium hirsutum HOM05D003540 ORTHO05D004012 9.1e-22 109.0 83 69.9
Gorai.010G036600 Gossypium raimondii HOM05D003540 ORTHO05D004012 9.1e-22 109.0 83 69.9
Aa31LG6G11550 Aethionema arabicum HOM05D003540 ORTHO05D004012 1.2e-21 108.6 85 67.1
Dinv42647 Davidia involucrata HOM05D003540 ORTHO05D004012 1.2e-21 108.6 83 68.7
Thhalv10009065m.g Eutrema salsugineum HOM05D003540 ORTHO05D004012 1.5e-21 108.2 84 66.7
Medtr3g099773 Medicago truncatula HOM05D003540 ORTHO05D004012 1.5e-21 108.2 79 75.9
THA.LOC104820588 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.5e-21 108.2 84 66.7
BcaB03g13908 Brassica carinata HOM05D003540 ORTHO05D004012 2.0e-21 107.8 84 67.9
MELO3C003542.2 Cucumis melo HOM05D003540 ORTHO05D004012 2.6e-21 107.5 83 68.7
Thecc.08G066000 Theobroma cacao HOM05D003540 ORTHO05D004012 2.6e-21 107.5 83 68.7
Carub.0001s2726 Capsella rubella HOM05D003540 ORTHO05D004012 4.5e-21 106.7 84 66.7
CsaV3_3G047800 Cucumis sativus L. HOM05D003540 ORTHO05D004012 4.5e-21 106.7 109 55.0
Cpa.g.sc36.201 Carica papaya HOM05D003540 ORTHO05D004012 7.7e-21 105.9 82 68.3
Glyma.06G098800 Glycine max HOM05D003540 ORTHO05D004012 7.7e-21 105.9 80 66.2
THA.LOC104812634 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 7.7e-21 105.9 84 64.3
Duzib093G0958 Durio zibethinus HOM05D003540 ORTHO05D004012 1.0e-20 105.5 83 68.7
CARHR028280 Cardamine hirsuta HOM05D003540 ORTHO05D004012 1.7e-20 104.8 84 66.7
Psat5g050000 Pisum sativum HOM05D003540 ORTHO05D004012 2.2e-20 104.4 81 71.6
Ciclev10002815m.g Citrus clementina HOM05D003540 ORTHO05D004012 2.9e-20 104.0 84 65.5
Potri.005G159600 Populus trichocarpa HOM05D003540 ORTHO05D004012 2.9e-20 104.0 80 70.0
Duzib041G0585 Durio zibethinus HOM05D003540 ORTHO05D004012 3.8e-20 103.6 83 67.5
AL1G42780 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 5.0e-20 103.2 84 65.5
CiPaw.07G169400 Carya illinoinensis HOM05D003540 ORTHO05D004012 5.0e-20 103.2 77 68.8
Actinidia29606 Actinidia chinensis HOM05D003540 ORTHO05D004012 6.5e-20 102.8 81 67.9
PGR031G1594 Punica granatum HOM05D003540 ORTHO05D004012 6.5e-20 102.8 81 65.4
Atru.chr13.1061 Acer truncatum HOM05D003540 ORTHO05D004012 8.5e-20 102.4 85 64.7
Duzib116G0544 Durio zibethinus HOM05D003540 ORTHO05D004012 8.5e-20 102.4 83 67.5
Dinv44828 Davidia involucrata HOM05D003540 ORTHO05D004012 1.5e-19 101.7 81 65.4
AT1G29060 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 1.9e-19 101.3 81 64.2
CSS0040126 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 1.9e-19 101.3 81 67.9
CANSAT25G0001 Cannabis sativa HOM05D003540 ORTHO05D004012 2.5e-19 100.9 68 75.0
Sabra05G0121300 Salix brachista HOM05D003540 ORTHO05D004012 4.2e-19 100.1 80 66.2
Eucgr.F00400 Eucalyptus grandis HOM05D003540 ORTHO05D004012 5.5e-19 99.8 82 63.4
PGSC0003DMG400024178 Solanum tuberosum HOM05D003540 ORTHO05D004012 5.5e-19 99.8 81 66.7
HanXRQChr08g0226211 Helianthus annuus HOM05D003540 ORTHO05D004012 7.2e-19 99.4 81 65.4
QL09p016915 Quercus lobata HOM05D003540 ORTHO05D004012 7.2e-19 99.4 81 66.7
Rhsim06G0075200 Rhododendron simsii HOM05D003540 ORTHO05D004012 7.2e-19 99.4 81 65.4
Sed0022834 Sechium edule HOM05D003540 ORTHO05D004012 7.2e-19 99.4 83 63.9
TWI12G0801 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 7.2e-19 99.4 73 69.9
Phvul.009G034800 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 1.6e-18 98.2 80 62.5
CSS0047709 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 2.1e-18 97.8 81 65.4
CAN.G1538.2 Capsicum annuum HOM05D003540 ORTHO05D004012 2.1e-18 97.8 81 65.4
ClCG11G014400 Citrullus lanatus HOM05D003540 ORTHO05D004012 2.1e-18 97.8 95 58.9
Solyc04g074940.4 Solanum lycopersicum HOM05D003540 ORTHO05D004012 2.7e-18 97.4 81 64.2
Sopen04g029890 Solanum pennellii HOM05D003540 ORTHO05D004012 2.7e-18 97.4 81 64.2
Prupe.1G526600 Prunus persica HOM05D003540 ORTHO05D004012 3.6e-18 97.1 72 66.7
PGSC0003DMG401002119 Solanum tuberosum HOM05D003540 ORTHO05D004012 3.6e-18 97.1 81 64.2
vmacro04682 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 3.6e-18 97.1 86 62.8
Nitab4.5_0013778g0010 Nicotiana tabacum HOM05D003540 ORTHO05D004012 4.7e-18 96.7 82 62.2
Peaxi162Scf00139g00825 Petunia axillaris HOM05D003540 ORTHO05D004012 4.7e-18 96.7 81 64.2
Potri.002G102400 Populus trichocarpa HOM05D003540 ORTHO05D004012 4.7e-18 96.7 68 72.1
Solyc02g063075.1 Solanum lycopersicum HOM05D003540 ORTHO05D004012 4.7e-18 96.7 81 65.4
Sopen02g014150 Solanum pennellii HOM05D003540 ORTHO05D004012 4.7e-18 96.7 81 65.4
Lsat_1_v5_gn_1_2480 Lactuca sativa HOM05D003540 ORTHO05D004012 8.0e-18 95.9 81 63.0
TAR625G0842 Trochodendron aralioides HOM05D003540 ORTHO05D004012 8.0e-18 95.9 79 63.3
HanXRQChr02g0046851 Helianthus annuus HOM05D003540 ORTHO05D004012 1.0e-17 95.5 81 63.0
Nitab4.5_0000008g0680 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.0e-17 95.5 81 63.0
ECA234G0792 Erigeron canadensis HOM05D003540 ORTHO05D004012 1.4e-17 95.1 81 61.7
Sed0006262 Sechium edule HOM05D003540 ORTHO05D004012 2.3e-17 94.4 83 61.4
ECA247G1419 Erigeron canadensis HOM05D003540 ORTHO05D004012 3.0e-17 94.0 81 61.7
AUR62027843 Chenopodium quinoa HOM05D003540 ORTHO05D004012 3.9e-17 93.6 77 66.2
TAR381G0359 Trochodendron aralioides HOM05D003540 ORTHO05D004012 3.9e-17 93.6 79 62.0
CAN.G460.5 Capsicum annuum HOM05D003540 ORTHO05D004012 6.7e-17 92.8 81 63.0
MD15G1380400 Malus domestica HOM05D003540 ORTHO05D004012 1.1e-16 92.0 72 61.1
Nitab4.5_0001984g0080 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.1e-16 92.0 81 63.0
Peaxi162Scf00725g00536 Petunia axillaris HOM05D003540 ORTHO05D004012 2.0e-16 91.3 81 61.7
Lalb_Chr23g0270201 Lupinus albus HOM05D003540 ORTHO05D004012 2.6e-16 90.9 61 73.8
Manes.02G147700 Manihot esculenta HOM05D003540 ORTHO05D004012 2.6e-16 90.9 72 68.1
MSTRG.9688 Avicennia marina HOM05D003540 ORTHO05D004012 3.3e-16 90.5 70 68.6
AUR62019000 Chenopodium quinoa HOM05D003540 ORTHO05D004012 3.3e-16 90.5 69 69.6
Cc10_g15500 Coffea canephora HOM05D003540 ORTHO05D004012 3.3e-16 90.5 81 59.3
Atru.chr3.3368 Acer truncatum HOM05D003185 ORTHO05D007711 9.7e-16 89.0 121 45.5
EL10Ac3g06094 Beta vulgaris HOM05D003540 ORTHO05D004012 9.7e-16 89.0 69 66.7
Hma1.2p1_0961F.1_g241695 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 1.3e-15 88.6 81 60.5
Hma1.2p1_0961F.1_g241710 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 1.3e-15 88.6 81 60.5
Migut.D01990 Erythranthe guttata HOM05D003540 ORTHO05D004012 2.8e-15 87.4 68 67.6
MBI06_g18789_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 2.8e-15 87.4 79 57.0
Nn1g08254 Nelumbo nucifera HOM05D003540 ORTHO05D004012 4.8e-15 86.7 79 60.8
Rhsim07G0209200 Rhododendron simsii HOM05D003540 ORTHO05D004012 6.3e-15 86.3 81 61.7
SalBow6G2258 Salvia bowleyana HOM05D003540 ORTHO05D004012 6.3e-15 86.3 70 67.1
SalBow6G4055 Salvia bowleyana HOM05D003540 ORTHO05D004012 6.3e-15 86.3 70 67.1
GSVIVG01009122001 Vitis vinifera HOM05D003540 ORTHO05D004012 8.2e-15 85.9 81 55.6
Ah.05g170560 Amaranthus hybridus HOM05D003540 ORTHO05D004012 1.1e-14 85.5 69 60.9
AUR62002400 Chenopodium quinoa HOM05D003540 ORTHO05D004012 1.8e-14 84.7 97 50.5
Ca_20792_v3 Cicer arietinum L. HOM05D001647 ORTHO05D001191 3.1e-14 84.0 60 76.7
MSTRG.11484 Avicennia marina HOM05D003540 ORTHO05D004012 7.0e-14 82.8 68 63.2
ATR0736G080 Amborella trichopoda HOM05D003540 ORTHO05D004012 9.1e-14 82.4 78 59.0
Aqoxy6G00672 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 1.6e-13 81.6 73 54.8
Oeu013165.1 Olea europaea HOM05D003540 ORTHO05D004012 1.6e-13 81.6 70 62.9
TWI74G0452 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 2.6e-13 80.9 91 47.3
Oeu024713.1 Olea europaea HOM05D003540 ORTHO05D004012 4.5e-13 80.1 70 61.4
CSS0040517 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 7.7e-13 79.3 81 56.8
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 7.7e-13 79.3 124 44.4
SGA_v2.0_scaffold37G14731 Striga asiatica HOM05D003540 ORTHO05D004012 7.7e-13 79.3 68 61.8
MBI02_g18294_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 1.0e-12 79.0 79 54.4
Aqoxy1G03155 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 1.3e-12 78.6 79 53.2
CiPaw.01G047900 Carya illinoinensis HOM05D003540 ORTHO05D004012 1.3e-12 78.6 67 59.7
SGA_v2.0_scaffold5G02749 Striga asiatica HOM05D003540 ORTHO05D004012 1.3e-12 78.6 68 61.8
CDE05G3211 Ceratophyllum demersum HOM05D000364 ORTHO05D004012 1.7e-12 78.2 118 40.7
HPP92_023309 Vanilla planifolia HOM05D003540 ORTHO05D004012 1.7e-12 78.2 70 55.7
QL06p047634 Quercus lobata HOM05D003540 ORTHO05D004012 2.2e-12 77.8 69 56.5
Cfa013710 Carpinus fangiana HOM05D003540 ORTHO05D004012 3.8e-12 77.0 53 73.6
Haze_22354 Corylus avellana HOM05D003540 ORTHO05D004012 3.8e-12 77.0 62 67.7
GSVIVG01003618001 Vitis vinifera HOM05D003540 ORTHO05D004012 3.8e-12 77.0 64 57.8
SalBow6G0357 Salvia bowleyana HOM05D003540 ORTHO05D004012 5.0e-12 76.6 68 58.8
COL.COLO4_27316 Corchorus olitorius HOM05D003540 ORTHO05D004012 6.5e-12 76.3 67 56.7
Sc23g0000530 Simmondsia chinensis HOM05D003540 ORTHO05D004012 6.5e-12 76.3 68 57.4
Sc01g0000960 Simmondsia chinensis HOM05D003540 ORTHO05D004012 8.5e-12 75.9 61 62.3
SalBow7G2649 Salvia bowleyana HOM05D003540 ORTHO05D004012 1.1e-11 75.5 68 57.4
Thecc.01G093400 Theobroma cacao HOM05D003540 ORTHO05D004012 1.1e-11 75.5 67 56.7
Migut.O00140 Erythranthe guttata HOM05D003540 ORTHO05D004012 1.9e-11 74.7 65 61.5
CDE05G3432 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 2.5e-11 74.3 67 56.7
DCAR_001735 Daucus carota HOM05D003540 ORTHO05D004012 3.2e-11 73.9 73 58.9
Gohir.A11G205600 Gossypium hirsutum HOM05D003540 ORTHO05D004012 4.2e-11 73.6 67 55.2
Gorai.007G236000 Gossypium raimondii HOM05D003540 ORTHO05D004012 7.2e-11 72.8 67 53.7
Nn1g05484 Nelumbo nucifera HOM05D003540 ORTHO05D004012 7.2e-11 72.8 60 58.3
MD08G1191600 Malus domestica HOM05D003540 ORTHO05D004012 9.4e-11 72.4 72 52.8
Gohir.D11G218000 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.2e-10 72.0 67 53.7
Lsat_1_v5_gn_6_105381 Lactuca sativa HOM05D003540 ORTHO05D004012 3.6e-10 70.5 61 59.0
Os03g0187700 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 6.1e-10 69.7 66 56.1
Nitab4.5_0007681g0020 Nicotiana tabacum HOM05D003540 ORTHO05D004012 8.0e-10 69.3 62 62.9
Os07g0577900 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 3.0e-09 67.4 67 52.2
Zm00001eb325480 Zea mays HOM05D003540 ORTHO05D004012 3.0e-09 67.4 67 52.2
SEGI_15699 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 6.8e-09 66.2 70 48.6
Hund16878 Selenicereus undatus HOM05D003540 ORTHO05D004012 8.8e-09 65.9 88 50.0
CSS0021893 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 2.6e-08 64.3 64 53.1
SEGI_39968 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 9.7e-08 62.4 69 49.3
FAN13G2229 Fragaria x ananassa HOM05D003540 ORTHO05D004012 1.7e-07 61.6 49 65.3
Zm00001eb107620 Zea mays HOM05D003540 ORTHO05D004012 2.2e-07 61.2 67 50.7
AagrBONN_evm.TU.Sc2ySwM_228.2385 Anthoceros agrestis HOM05D003540 ORTHO05D004012 3.7e-07 60.5 97 38.1
FvH4_5g35960 Fragaria vesca HOM05D003540 ORTHO05D004012 8.3e-07 59.3 56 58.9
FAN18G2789 Fragaria x ananassa HOM05D003540 ORTHO05D004012 8.3e-07 59.3 56 58.9
RcHm_v2.0_Chr7g0237701 Rosa chinensis HOM05D003540 ORTHO05D004012 8.3e-07 59.3 56 58.9
FAN08G1899 Fragaria x ananassa HOM05D003540 ORTHO05D004012 1.4e-06 58.5 49 63.3
PSO675G6040 Papaver somniferum HOM05D003540 ORTHO05D004012 1.4e-06 58.5 72 47.2
Oeu023447.1 Olea europaea HOM05D003540 ORTHO05D004012 2.4e-06 57.8 52 59.6
TWI56G0839 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 4.1e-06 57.0 37 67.6
vmacro21941 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 7.0e-06 56.2 81 40.7


User provided reference genes

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