Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05341_v3 Cicer arietinum L. HOM05D003700 ORTHO05D004160 3.3e-28 127.9 75 100.0
Ca_21822_v3 Cicer arietinum L. HOM05D003700 ORTHO05D004160 8.2e-27 123.2 74 98.6
TPR.G9264 Trifolium pratense HOM05D003700 ORTHO05D004160 2.8e-19 98.2 56 80.4
COL.COLO4_35537 Corchorus olitorius HOM05D003700 ORTHO05D004160 6.3e-19 97.1 74 78.4
Duzib205G1944 Durio zibethinus HOM05D003700 ORTHO05D004160 6.3e-19 97.1 74 67.6
Psat4g050880 Pisum sativum HOM05D003700 ORTHO05D004160 6.3e-19 97.1 52 82.7
Phvul.003G190000 Phaseolus vulgaris HOM05D003700 ORTHO05D004160 1.1e-18 96.3 61 75.4
Ciclev10022133m.g Citrus clementina HOM05D003700 ORTHO05D004160 1.4e-18 95.9 56 76.8
Glyma.05G026600 Glycine max HOM05D003700 ORTHO05D004160 2.4e-18 95.1 50 80.0
PSO013G0046 Papaver somniferum HOM05D003700 ORTHO05D004160 2.4e-18 95.1 52 78.8
PSO832G2691 Papaver somniferum HOM05D003700 ORTHO05D004160 2.4e-18 95.1 52 78.8
Atru.chr9.273 Acer truncatum HOM05D003700 ORTHO05D004160 4.1e-18 94.4 56 73.2
MELO3C017173.2 Cucumis melo HOM05D003700 ORTHO05D004160 4.1e-18 94.4 49 85.7
Glyma.04G169200 Glycine max HOM05D003700 ORTHO05D004160 1.2e-17 92.8 52 78.8
Actinidia04888 Actinidia chinensis HOM05D003700 ORTHO05D004160 1.6e-17 92.4 51 76.5
Actinidia37626 Actinidia chinensis HOM05D003700 ORTHO05D004160 1.6e-17 92.4 51 76.5
ClCG06G016210 Citrullus lanatus HOM05D003700 ORTHO05D004160 1.6e-17 92.4 49 85.7
Sed0020544 Sechium edule HOM05D003700 ORTHO05D004160 1.6e-17 92.4 49 85.7
Thecc.03G087800 Theobroma cacao HOM05D003700 ORTHO05D004160 1.6e-17 92.4 74 75.7
VMungo1215G2263 Vigna mungo HOM05D003700 ORTHO05D004160 1.6e-17 92.4 54 81.5
Cfa018940 Carpinus fangiana HOM05D003700 ORTHO05D004160 2.0e-17 92.0 52 75.0
CsaV3_1G002330 Cucumis sativus L. HOM05D003700 ORTHO05D004160 2.0e-17 92.0 49 85.7
QL10p017042 Quercus lobata HOM05D003700 ORTHO05D004160 2.0e-17 92.0 49 79.6
Nn3g17245 Nelumbo nucifera HOM05D003700 ORTHO05D004160 2.6e-17 91.7 57 75.4
Cc04_g16600 Coffea canephora HOM05D003700 ORTHO05D004160 3.5e-17 91.3 54 74.1
Haze_07324 Corylus avellana HOM05D003700 ORTHO05D004160 3.5e-17 91.3 52 75.0
Dinv19966 Davidia involucrata HOM05D003700 ORTHO05D004160 3.5e-17 91.3 49 77.6
TAR622G0407 Trochodendron aralioides HOM05D003700 ORTHO05D004160 3.5e-17 91.3 54 72.2
TAR633G2224 Trochodendron aralioides HOM05D003700 ORTHO05D004160 3.5e-17 91.3 56 69.6
Atru.chr11.2689 Acer truncatum HOM05D003700 ORTHO05D004160 4.5e-17 90.9 55 70.9
Glyma.17G100300 Glycine max HOM05D003700 ORTHO05D004160 4.5e-17 90.9 49 81.6
Lj4g0000044 Lotus japonicus HOM05D003700 ORTHO05D004160 4.5e-17 90.9 51 80.4
Peaxi162Scf00013g00333 Petunia axillaris HOM05D003700 ORTHO05D004160 4.5e-17 90.9 54 77.8
Sed0006743 Sechium edule HOM05D003700 ORTHO05D004160 4.5e-17 90.9 51 78.4
TAR371G1074 Trochodendron aralioides HOM05D003700 ORTHO05D004160 4.5e-17 90.9 56 69.6
arahy.Tifrunner.gnm1.ann1.Y09UDZ Arachis hypogaea HOM05D003700 ORTHO05D004160 5.9e-17 90.5 54 70.4
Phvul.009G187000 Phaseolus vulgaris HOM05D003700 ORTHO05D004160 5.9e-17 90.5 52 76.9
SalBow7G0736 Salvia bowleyana HOM05D003700 ORTHO05D004160 5.9e-17 90.5 52 75.0
TAR622G0031 Trochodendron aralioides HOM05D003700 ORTHO05D004160 5.9e-17 90.5 52 75.0
arahy.Tifrunner.gnm1.ann1.N073K6 Arachis hypogaea HOM05D003700 ORTHO05D004160 7.7e-17 90.1 54 70.4
CAN.G587.1 Capsicum annuum HOM05D003700 ORTHO05D004160 7.7e-17 90.1 54 77.8
vmacro11460 Vaccinium macrocarpon HOM05D003700 ORTHO05D004160 7.7e-17 90.1 49 77.6
arahy.Tifrunner.gnm1.ann1.4WDU0A Arachis hypogaea HOM05D003700 ORTHO05D004160 1.0e-16 89.7 55 69.1
arahy.Tifrunner.gnm1.ann1.6Q68A3 Arachis hypogaea HOM05D003700 ORTHO05D004160 1.0e-16 89.7 55 69.1
ECA247G0346 Erigeron canadensis HOM05D003700 ORTHO05D004160 1.0e-16 89.7 49 77.6
HanXRQChr04g0107321 Helianthus annuus HOM05D003700 ORTHO05D004160 1.0e-16 89.7 52 75.0
TWI81G0244 Tripterygium wilfordii HOM05D003700 ORTHO05D004160 1.0e-16 89.7 55 70.9
unitig_62.g23549 Utricularia gibba HOM05D003700 ORTHO05D004160 1.0e-16 89.7 52 73.1
Lalb_Chr07g0178061 Lupinus albus HOM05D003700 ORTHO05D004160 1.3e-16 89.4 49 81.6
Glyma.06G194200 Glycine max HOM05D003700 ORTHO05D004160 2.2e-16 88.6 49 79.6
Lsat_1_v5_gn_1_13920 Lactuca sativa HOM05D003700 ORTHO05D004160 2.2e-16 88.6 55 74.5
Hund02648 Selenicereus undatus HOM05D003700 ORTHO05D004160 2.2e-16 88.6 51 72.5
DCAR_016563 Daucus carota HOM05D003700 ORTHO05D004160 2.9e-16 88.2 52 75.0
Lj5A110T129 Lonicera japonica HOM05D003700 ORTHO05D004160 2.9e-16 88.2 49 79.6
Nitab4.5_0011015g0030 Nicotiana tabacum HOM05D003700 ORTHO05D004160 2.9e-16 88.2 74 59.5
Nitab4.5_0007189g0070 Nicotiana tabacum HOM05D003700 ORTHO05D004160 3.8e-16 87.8 51 76.5
Ca_13772_v3 Cicer arietinum L. HOM05D003700 ORTHO05D004160 5.0e-16 87.4 52 71.2
Aqoxy3G03389 Aquilegia oxysepala HOM05D003700 ORTHO05D004160 6.5e-16 87.0 52 73.1
CANSAT56G3341 Cannabis sativa HOM05D003700 ORTHO05D004160 6.5e-16 87.0 52 73.1
Prupe.5G193800 Prunus persica HOM05D003700 ORTHO05D004160 6.5e-16 87.0 52 73.1
Solyc06g069770.3 Solanum lycopersicum HOM05D003700 ORTHO05D004160 6.5e-16 87.0 54 72.2
SGA_v2.0_scaffold114G31908 Striga asiatica HOM05D003700 ORTHO05D004160 6.5e-16 87.0 56 66.1
MD06G1193500 Malus domestica HOM05D003700 ORTHO05D004160 8.5e-16 86.7 53 69.8
MD14G1200600 Malus domestica HOM05D003700 ORTHO05D004160 8.5e-16 86.7 53 71.7
PGSC0003DMG400033045 Solanum tuberosum HOM05D003700 ORTHO05D004160 8.5e-16 86.7 54 74.1
CiPaw.11G044800 Carya illinoinensis HOM05D003700 ORTHO05D004160 1.1e-15 86.3 55 67.3
HanXRQChr02g0043591 Helianthus annuus HOM05D003700 ORTHO05D004160 1.1e-15 86.3 55 72.7
Medtr0140s0050 Medicago truncatula HOM05D003700 ORTHO05D004160 2.5e-15 85.1 52 78.8
TAR381G1035 Trochodendron aralioides HOM05D003700 ORTHO05D004160 2.5e-15 85.1 52 69.2
Gohir.A03G066800 Gossypium hirsutum HOM05D003700 ORTHO05D004160 3.2e-15 84.7 50 70.0
Hma1.2p1_1936F.1_g308180 Hydrangea macrophylla HOM05D003700 ORTHO05D004160 3.2e-15 84.7 51 70.6
Sopen06g027060 Solanum pennellii HOM05D003700 ORTHO05D004160 3.2e-15 84.7 54 70.4
Lalb_Chr08g0235721 Lupinus albus HOM05D003700 ORTHO05D004160 4.2e-15 84.3 52 67.3
VMungo1309G1081 Vigna mungo HOM05D003700 ORTHO05D004160 4.2e-15 84.3 51 68.6
Eucgr.B00508 Eucalyptus grandis HOM05D003700 ORTHO05D004160 7.2e-15 83.6 52 71.2
PGR083G2029 Punica granatum HOM05D003700 ORTHO05D004160 7.2e-15 83.6 49 75.5
Sc12g0006380 Simmondsia chinensis HOM05D003700 ORTHO05D004160 7.2e-15 83.6 54 63.0
SGA_v2.0_scaffold7G04064 Striga asiatica HOM05D003700 ORTHO05D004160 7.2e-15 83.6 52 71.2
Oeu047295.1 Olea europaea HOM05D003700 ORTHO05D004160 1.2e-14 82.8 52 69.2
Sc04g0002660 Simmondsia chinensis HOM05D003700 ORTHO05D004160 1.2e-14 82.8 52 67.3
MSTRG.9629 Avicennia marina HOM05D003700 ORTHO05D004160 1.6e-14 82.4 56 62.5
Gohir.D11G035000 Gossypium hirsutum HOM05D003700 ORTHO05D004160 1.6e-14 82.4 55 63.6
Medtr3g435580 Medicago truncatula HOM05D003700 ORTHO05D004160 2.1e-14 82.0 52 65.4
TPR.G11909 Trifolium pratense HOM05D003700 ORTHO05D004160 2.1e-14 82.0 52 65.4
Migut.D01816 Erythranthe guttata HOM05D003700 ORTHO05D004160 2.7e-14 81.6 52 69.2
FAN18G4275 Fragaria x ananassa HOM05D003700 ORTHO05D004160 4.7e-14 80.9 49 67.3
GSVIVG01007999001 Vitis vinifera HOM05D003700 ORTHO05D004160 4.7e-14 80.9 49 69.4
FvH4_5g14920 Fragaria vesca HOM05D003700 ORTHO05D004160 6.1e-14 80.5 49 67.3
FAN04G3111 Fragaria x ananassa HOM05D003700 ORTHO05D004160 6.1e-14 80.5 49 67.3
FAN08G2213 Fragaria x ananassa HOM05D003700 ORTHO05D004160 6.1e-14 80.5 49 67.3
FAN13G0167 Fragaria x ananassa HOM05D003700 ORTHO05D004160 6.1e-14 80.5 49 67.3
FAN13G0273 Fragaria x ananassa HOM05D003700 ORTHO05D004160 6.1e-14 80.5 49 67.3
Gohir.D03G093300 Gossypium hirsutum HOM05D003700 ORTHO05D004160 6.1e-14 80.5 48 68.8
RcHm_v2.0_Chr7g0181461 Rosa chinensis HOM05D003700 ORTHO05D004160 6.1e-14 80.5 49 67.3
DCAR_021520 Daucus carota HOM05D003700 ORTHO05D004160 8.0e-14 80.1 52 67.3
Lj1g0000196 Lotus japonicus HOM05D003700 ORTHO05D004160 1.4e-13 79.3 49 71.4
Potri.005G033100 Populus trichocarpa HOM05D003700 ORTHO05D004160 1.4e-13 79.3 52 71.2
Sabra05G0035300 Salix brachista HOM05D003700 ORTHO05D004160 1.4e-13 79.3 52 71.2
Sp2g25630 Schrenkiella parvula HOM05D003700 ORTHO05D004160 1.8e-13 79.0 38 86.8
Gohir.A11G031511 Gossypium hirsutum HOM05D003700 ORTHO05D004160 2.3e-13 78.6 55 61.8
Gorai.007G037700 Gossypium raimondii HOM05D003700 ORTHO05D004160 2.3e-13 78.6 55 61.8
Manes.06G092100 Manihot esculenta HOM05D003700 ORTHO05D004160 2.3e-13 78.6 44 72.7
Gohir.A11G031331 Gossypium hirsutum HOM05D003700 ORTHO05D004160 3.0e-13 78.2 53 64.2
Aa31LG4G16330 Aethionema arabicum HOM05D003700 ORTHO05D004160 4.0e-13 77.8 55 69.1
Rhsim07G0194700 Rhododendron simsii HOM05D003700 ORTHO05D004160 5.2e-13 77.4 55 65.5
AL8G39330 Arabidopsis lyrata HOM05D003700 ORTHO05D004160 8.8e-13 76.6 38 81.6
BcaB07g29837 Brassica carinata HOM05D003700 ORTHO05D004160 8.8e-13 76.6 38 81.6
Lalb_Chr23g0273811 Lupinus albus HOM05D003700 ORTHO05D004160 8.8e-13 76.6 54 68.5
Psat5g193120 Pisum sativum HOM05D003700 ORTHO05D004160 8.8e-13 76.6 49 63.3
THA.LOC104821421 Tarenaya hassleriana HOM05D003700 ORTHO05D004160 8.8e-13 76.6 44 70.5
Aa31LG11G1190 Aethionema arabicum HOM05D003700 ORTHO05D004160 2.0e-12 75.5 39 82.1
BcaC03g18149 Brassica carinata HOM05D003700 ORTHO05D004160 2.0e-12 75.5 38 78.9
A02p42310 Brassica napus HOM05D003700 ORTHO05D004160 2.0e-12 75.5 38 78.9
C02p62180 Brassica napus HOM05D003700 ORTHO05D004160 2.0e-12 75.5 38 78.9
BolC2t12276H Brassica oleracea HOM05D003700 ORTHO05D004160 2.0e-12 75.5 38 78.9
BraA02t09160Z Brassica rapa HOM05D003700 ORTHO05D004160 2.0e-12 75.5 38 78.9
ATR1127G116 Amborella trichopoda HOM05D003700 ORTHO05D004160 2.6e-12 75.1 47 66.0
BcaB02g09647 Brassica carinata HOM05D003700 ORTHO05D004160 3.4e-12 74.7 38 81.6
BcaC01g02471 Brassica carinata HOM05D003700 ORTHO05D004160 3.4e-12 74.7 38 81.6
A06p29150 Brassica napus HOM05D003700 ORTHO05D004160 3.4e-12 74.7 38 81.6
C03p64440 Brassica napus HOM05D003700 ORTHO05D004160 3.4e-12 74.7 38 81.6
BolC3t18700H Brassica oleracea HOM05D003700 ORTHO05D004160 3.4e-12 74.7 38 81.6
BraA06t25863Z Brassica rapa HOM05D003700 ORTHO05D004160 3.4e-12 74.7 38 81.6
CARHR276240 Cardamine hirsuta HOM05D003700 ORTHO05D004160 3.4e-12 74.7 52 65.4
CDE08G0283 Ceratophyllum demersum HOM05D003700 ORTHO05D004160 3.4e-12 74.7 41 78.0
Nitab4.5_0001128g0150 Nicotiana tabacum HOM05D003700 ORTHO05D004160 3.4e-12 74.7 45 71.1
Nitab4.5_0006000g0030 Nicotiana tabacum HOM05D003700 ORTHO05D004160 5.7e-12 73.9 51 66.7
Potri.013G022500 Populus trichocarpa HOM05D003700 ORTHO05D004160 5.7e-12 73.9 56 60.7
AT5G62440 Arabidopsis thaliana HOM05D003700 ORTHO05D004160 7.5e-12 73.6 38 78.9
Carub.0008s2312 Capsella rubella HOM05D003700 ORTHO05D004160 7.5e-12 73.6 38 78.9
PGSC0003DMG400019531 Solanum tuberosum HOM05D003700 ORTHO05D004160 7.5e-12 73.6 51 64.7
C09p08590 Brassica napus HOM05D003700 ORTHO05D004160 1.3e-11 72.8 49 65.3
HPP92_005935 Vanilla planifolia HOM05D003700 ORTHO05D004160 1.3e-11 72.8 49 65.3
BraA09t36419Z Brassica rapa HOM05D003700 ORTHO05D004160 1.7e-11 72.4 61 59.0
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 1.7e-11 72.4 56 62.5
Solyc03g116020.3 Solanum lycopersicum HOM05D003700 ORTHO05D004160 1.7e-11 72.4 44 68.2
Dinv38714 Davidia involucrata HOM05D003700 ORTHO05D004160 2.2e-11 72.0 39 76.9
Sopen03g035010 Solanum pennellii HOM05D003700 ORTHO05D004160 3.7e-11 71.2 44 65.9
BolC9t53768H Brassica oleracea HOM05D003700 ORTHO05D004160 4.8e-11 70.9 53 60.4
Gorai.003G097200 Gossypium raimondii HOM05D003700 ORTHO05D004160 4.8e-11 70.9 35 80.0
A09p07680 Brassica napus HOM05D003700 ORTHO05D004160 8.3e-11 70.1 35 82.9
CAN.G837.20 Capsicum annuum HOM05D003700 ORTHO05D004160 8.3e-11 70.1 52 63.5
EL10Ac5g11021 Beta vulgaris HOM05D003700 ORTHO05D004160 1.1e-10 69.7 49 61.2
Sabra13G0024600 Salix brachista HOM05D003700 ORTHO05D004160 1.1e-10 69.7 47 63.8
Gohir.D11G034700 Gossypium hirsutum HOM05D003700 ORTHO05D004160 1.4e-10 69.3 55 56.4
Gorai.007G037600 Gossypium raimondii HOM05D003700 ORTHO05D004160 1.4e-10 69.3 55 56.4
MBI17_g39902_MAGBIO Magnolia biondii HOM05D003700 ORTHO05D004160 1.8e-10 68.9 59 52.5
Cpa.g.sc111.10 Carica papaya HOM05D003700 ORTHO05D004160 4.1e-10 67.8 53 58.5
Potri.013G021800 Populus trichocarpa HOM05D003700 ORTHO05D004160 1.6e-09 65.9 55 54.5
Rhsim08G0137200 Rhododendron simsii HOM05D003700 ORTHO05D004160 1.6e-09 65.9 54 61.1
arahy.Tifrunner.gnm1.ann1.L6WE06 Arachis hypogaea HOM05D003700 ORTHO05D004160 2.7e-09 65.1 38 71.1
Zm00001eb401550 Zea mays HOM05D003700 ORTHO05D004160 3.5e-09 64.7 39 69.2
Os03g0187000 Oryza sativa ssp. japonica HOM05D003700 ORTHO05D004160 4.5e-09 64.3 58 53.4
Zm00001eb006550 Zea mays HOM05D003700 ORTHO05D004160 4.5e-09 64.3 57 54.4
CAN.G310.1 Capsicum annuum HOM05D003700 ORTHO05D004160 1.9e-07 58.9 43 60.5
Pp3c10_17790 Physcomitrium patens HOM05D003700 ORTHO05D004160 2.5e-07 58.5 36 63.9
SEGI_41222 Sequoiadendron giganteum HOM05D003700 ORTHO05D004160 3.2e-07 58.2 39 59.0
Pp3c23_7150 Physcomitrium patens HOM05D003700 ORTHO05D004160 4.2e-07 57.8 37 56.8
arahy.Tifrunner.gnm1.ann1.DV8NSN Arachis hypogaea HOM05D003700 ORTHO05D004160 7.2e-07 57.0 38 63.2
Pp3c20_9520 Physcomitrium patens HOM05D003700 ORTHO05D004160 1.2e-06 56.2 34 61.8
SMO141G0011 Selaginella moellendorffii HOM05D003700 ORTHO05D004160 1.6e-06 55.8 36 52.8
arahy.Tifrunner.gnm1.ann1.G7C7PJ Arachis hypogaea HOM05D003700 ORTHO05D004160 4.7e-06 54.3 37 62.2
arahy.Tifrunner.gnm1.ann1.H69J8I Arachis hypogaea HOM05D003700 ORTHO05D004160 4.7e-06 54.3 37 62.2
Mapoly0139s0003 Marchantia polymorpha HOM05D003700 ORTHO05D004160 6.1e-06 53.9 37 51.4


User provided reference genes

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