Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 2.2e-114 415.6 205 100.0
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 3.0e-95 352.1 201 88.1
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 3.3e-94 348.6 201 87.6
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 4.0e-92 341.7 190 88.9
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 3.8e-90 335.1 205 82.0
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.5e-86 323.2 201 79.6
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 1.1e-84 317.0 209 79.4
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 2.1e-80 302.8 192 79.2
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 1.5e-78 296.6 194 75.8
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 1.9e-78 296.2 197 73.1
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 4.3e-78 295.0 195 73.3
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 1.6e-77 293.1 194 71.1
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 4.8e-77 291.6 193 75.6
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 4.8e-77 291.6 190 76.3
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 8.1e-77 290.8 193 74.1
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 8.1e-77 290.8 194 72.2
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.8e-76 289.7 185 75.1
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 6.9e-76 287.7 190 72.6
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 9.0e-76 287.3 188 75.0
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 1.2e-75 287.0 194 70.1
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 1.2e-75 287.0 194 71.1
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 1.5e-75 286.6 198 68.7
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 2.6e-75 285.8 194 70.6
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 5.8e-75 284.6 192 70.8
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 5.8e-75 284.6 191 71.2
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 7.6e-75 284.3 191 71.7
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 1.3e-74 283.5 195 70.3
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 2.2e-74 282.7 191 70.7
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 2.9e-74 282.3 192 72.9
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 6.4e-74 281.2 189 70.4
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 6.4e-74 281.2 192 72.4
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 8.4e-74 280.8 197 69.5
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 8.4e-74 280.8 190 71.1
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 5.5e-73 278.1 191 69.6
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 7.1e-73 277.7 200 69.0
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 1.2e-72 276.9 188 69.1
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 2.1e-72 276.2 180 75.0
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 3.5e-72 275.4 194 68.6
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 6.0e-72 274.6 192 67.2
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.0e-71 273.9 204 66.2
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 3.0e-71 272.3 183 73.2
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 3.0e-71 272.3 190 70.0
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 5.1e-71 271.6 195 67.7
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 5.1e-71 271.6 192 69.3
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 1.5e-70 270.0 189 66.1
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 2.5e-70 269.2 187 69.5
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 7.4e-70 267.7 193 67.4
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 9.6e-70 267.3 187 68.4
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 1.6e-69 266.5 208 66.3
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 1.6e-69 266.5 192 66.7
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 2.1e-69 266.2 188 68.1
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 2.8e-69 265.8 186 72.6
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 4.8e-69 265.0 181 71.3
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 6.2e-69 264.6 196 65.3
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 6.2e-69 264.6 195 67.2
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 8.1e-69 264.2 193 66.3
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 8.1e-69 264.2 193 66.3
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.1e-68 263.8 198 65.2
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 1.1e-68 263.8 202 66.3
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 2.4e-68 262.7 198 65.2
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 4.0e-68 261.9 198 65.7
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 4.0e-68 261.9 185 67.6
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 5.3e-68 261.5 198 65.7
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 6.9e-68 261.2 201 64.7
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 1.5e-67 260.0 198 64.6
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 1.5e-67 260.0 198 64.6
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 2.0e-67 259.6 190 64.7
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 4.5e-67 258.5 204 62.7
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 4.5e-67 258.5 198 64.6
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 5.8e-67 258.1 198 64.1
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 5.8e-67 258.1 194 66.5
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 7.6e-67 257.7 201 64.7
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 1.3e-66 256.9 195 65.6
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 1.3e-66 256.9 165 74.5
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 1.7e-66 256.5 194 66.0
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 3.8e-66 255.4 198 63.1
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 4.9e-66 255.0 165 73.9
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 8.4e-66 254.2 190 65.8
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 8.4e-66 254.2 188 65.4
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 5.5e-65 251.5 194 63.4
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 9.3e-65 250.8 192 67.2
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 1.2e-59 233.8 192 58.3
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 5.9e-59 231.5 185 61.1
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 2.9e-58 229.2 178 62.9
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 4.2e-57 225.3 168 64.9
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 1.6e-56 223.4 190 58.4
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 3.9e-55 218.8 183 58.5
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 3.9e-55 218.8 149 69.8
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 8.7e-55 217.6 191 57.1
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.5e-54 216.9 187 57.8
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 9.4e-49 197.6 197 53.3
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 1.1e-46 190.7 192 53.1
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 9.7e-46 187.6 148 62.8
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 2.4e-44 183.0 197 48.7
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 3.1e-44 182.6 194 47.9
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 4.5e-35 152.1 93 77.4
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 5.9e-35 151.8 110 64.5
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 1.0e-31 141.0 113 63.7
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 1.8e-31 140.2 102 64.7
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 4.8e-29 132.1 78 78.2
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 1.6e-27 127.1 80 77.5
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 8.5e-26 121.3 96 65.6
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.6e-19 100.5 92 56.5
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 1.3e-18 97.4 159 41.5
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 1.5e-17 94.0 72 65.3
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 3.2e-17 92.8 76 59.2
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 3.2e-17 92.8 76 59.2
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 2.9e-10 69.7 169 30.2
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 3.8e-10 69.3 178 29.2
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 5.6e-09 65.5 172 30.2
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 5.6e-09 65.5 155 28.4
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 5.6e-09 65.5 172 30.2
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 5.6e-09 65.5 204 27.5
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 5.6e-09 65.5 172 30.2
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 5.6e-09 65.5 173 30.6
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 7.3e-09 65.1 169 30.8
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 9.5e-09 64.7 171 28.1
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 9.5e-09 64.7 187 28.3
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 1.2e-08 64.3 198 28.3
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.2e-08 64.3 172 30.2
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 1.2e-08 64.3 175 31.4
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.6e-08 63.9 182 29.1
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 1.6e-08 63.9 182 29.1
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.6e-08 63.9 166 28.3
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 2.1e-08 63.5 170 28.8
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 2.8e-08 63.2 180 28.3
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 4.7e-08 62.4 171 31.0
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 4.7e-08 62.4 171 29.8
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 4.7e-08 62.4 172 29.7
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 4.7e-08 62.4 185 29.7
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 6.1e-08 62.0 173 28.3
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 6.1e-08 62.0 147 27.9
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 6.1e-08 62.0 166 27.7
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 8.0e-08 61.6 172 28.5
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 8.0e-08 61.6 172 29.1
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.0e-07 61.2 49 57.1
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 1.0e-07 61.2 169 29.0
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.4e-07 60.8 172 28.5
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.8e-07 60.5 169 28.4
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 2.3e-07 60.1 169 29.6
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.3e-07 60.1 172 29.1
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 2.3e-07 60.1 169 29.6
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.3e-07 60.1 172 27.9
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 3.0e-07 59.7 164 28.7
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 3.0e-07 59.7 162 30.2
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 4.0e-07 59.3 176 29.0
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 4.0e-07 59.3 171 29.2
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 4.0e-07 59.3 172 27.9
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 5.2e-07 58.9 169 28.4
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 5.2e-07 58.9 174 28.7
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 6.8e-07 58.5 176 29.5
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 6.8e-07 58.5 145 28.3
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 6.8e-07 58.5 136 29.4
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 6.8e-07 58.5 175 29.7
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 8.9e-07 58.2 169 28.4
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.5e-06 57.4 167 26.9
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 1.5e-06 57.4 169 29.0
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 1.5e-06 57.4 166 29.5
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.5e-06 57.4 164 29.9
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 1.5e-06 57.4 172 29.1
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 2.0e-06 57.0 169 28.4
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 2.0e-06 57.0 178 27.5
Medtr1g038520 Medicago truncatula HOM05D006499 ORTHO05D007874 2.0e-06 57.0 56 48.2
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 2.0e-06 57.0 172 27.3
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 2.6e-06 56.6 172 28.5
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 4.4e-06 55.8 169 28.4
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 4.4e-06 55.8 183 29.0
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 5.7e-06 55.5 169 27.8
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 7.5e-06 55.1 162 27.8
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 7.5e-06 55.1 162 28.4
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 7.5e-06 55.1 176 29.5
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 7.5e-06 55.1 165 29.7
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 7.5e-06 55.1 172 26.7
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 9.8e-06 54.7 136 26.5


User provided reference genes

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