Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.2e-201 706.4 390 100.0
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 5.1e-128 461.8 405 67.9
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 4.6e-121 438.7 408 71.6
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 7.8e-121 438.0 419 67.8
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.1e-117 427.6 405 67.7
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 3.2e-106 389.4 335 69.9
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 8.7e-104 381.3 401 67.6
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 1.2e-100 370.9 397 66.2
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 8.4e-99 364.8 438 55.0
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.9e-95 353.6 418 57.4
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 3.3e-95 352.8 438 53.9
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 9.6e-95 351.3 420 54.8
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 1.5e-92 344.0 420 53.3
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 1.8e-88 330.5 439 50.6
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 5.7e-87 325.5 445 53.5
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 8.2e-86 321.6 416 53.8
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 8.5e-83 311.6 405 53.8
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 1.4e-82 310.8 426 53.5
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 5.5e-82 308.9 400 53.8
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.6e-81 307.4 425 54.4
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 1.0e-80 304.7 413 52.3
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 3.3e-79 299.7 439 50.6
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.7e-78 296.2 434 50.7
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 6.3e-78 295.4 408 52.2
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 8.2e-78 295.0 441 49.7
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 8.2e-78 295.0 442 50.0
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 2.4e-77 293.5 424 50.0
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 3.1e-77 293.1 442 49.8
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.2e-76 291.2 440 50.2
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 4.5e-76 289.3 415 47.5
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 5.9e-76 288.9 400 48.2
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 2.2e-75 287.0 427 53.2
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 7.2e-74 282.0 429 45.9
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 7.9e-73 278.5 423 48.2
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 7.9e-73 278.5 423 48.2
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 7.9e-73 278.5 395 50.9
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 7.9e-73 278.5 410 51.7
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.0e-72 278.1 427 43.6
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.9e-72 276.2 410 51.0
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 1.1e-71 274.6 397 47.4
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.6e-71 273.5 412 50.7
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 9.7e-71 271.6 425 48.0
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 8.2e-70 268.5 420 48.3
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 2.2e-67 260.4 447 45.6
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 3.8e-67 259.6 411 45.5
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 8.0e-65 251.9 394 44.9
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 2.3e-64 250.4 413 46.2
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 6.7e-64 248.8 413 46.0
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.5e-63 247.7 411 44.3
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 7.5e-63 245.4 251 61.0
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.7e-62 243.0 407 42.5
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 9.1e-61 238.4 438 43.6
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 9.1e-61 238.4 400 42.5
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 1.3e-59 234.6 372 47.8
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 1.1e-58 231.5 461 42.7
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 1.6e-57 227.6 308 48.4
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 6.1e-57 225.7 407 46.4
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 6.3e-54 215.7 379 40.6
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 5.9e-52 209.1 406 41.6
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.7e-51 207.6 407 41.0
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.0e-51 206.1 381 40.7
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.0e-51 206.1 407 37.8
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 5.0e-51 206.1 407 37.8
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.5e-50 204.5 392 45.9
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.2e-50 203.0 381 40.4
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.2e-50 203.0 381 40.4
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 4.2e-50 203.0 398 43.2
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.1e-49 200.7 400 39.5
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 4.7e-49 199.5 397 43.1
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 6.1e-49 199.1 392 37.0
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 1.4e-48 198.0 396 38.9
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.8e-48 197.6 371 40.7
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.2e-47 194.9 381 39.6
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 3.4e-47 193.4 401 40.1
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 6.3e-46 189.1 364 41.5
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 1.1e-45 188.3 407 38.6
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 5.4e-45 186.0 384 44.8
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.0e-43 181.8 395 37.7
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 1.3e-43 181.4 377 37.4
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 5.0e-43 179.5 373 37.5
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 5.0e-43 179.5 373 37.5
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 1.5e-42 177.9 412 40.3
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.5e-42 177.9 395 38.0
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 2.8e-41 173.7 384 43.8
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 6.1e-41 172.6 414 39.9
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 8.0e-41 172.2 468 38.2
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.8e-40 171.0 467 39.2
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 8.9e-40 168.7 382 43.5
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 8.9e-40 168.7 382 43.5
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.0e-39 167.5 385 36.6
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 3.4e-39 166.8 487 35.7
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 1.7e-38 164.5 371 37.7
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 2.4e-37 160.6 374 39.6
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 5.4e-37 159.5 409 39.4
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 7.0e-37 159.1 402 41.0
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 3.5e-36 156.8 466 38.0
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 2.3e-35 154.1 391 38.1
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 3.0e-35 153.7 374 38.8
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 5.0e-35 152.9 375 38.4
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 8.6e-35 152.1 252 44.8
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 1.5e-34 151.4 387 34.1
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 8.0e-33 145.6 389 34.2
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 8.9e-32 142.1 395 35.4
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.0e-31 141.0 416 33.2
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 5.8e-31 139.4 435 31.5
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 6.4e-30 136.0 435 35.4
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 6.4e-30 136.0 418 36.4
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 6.4e-30 136.0 373 36.2
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 8.3e-30 135.6 422 31.8
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 8.3e-30 135.6 373 32.4
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.9e-29 134.4 389 32.9
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 3.2e-29 133.7 393 37.7
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.7e-28 130.6 270 38.9
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 1.2e-25 121.7 320 34.7
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 1.2e-25 121.7 221 43.0
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 4.7e-25 119.8 467 30.6
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 6.2e-25 119.4 372 34.7
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 6.2e-25 119.4 372 34.7
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 1.1e-24 118.6 438 29.7
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 2.3e-24 117.5 468 33.8
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 3.1e-24 117.1 405 31.9
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 3.1e-24 117.1 376 31.9
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 5.2e-24 116.3 419 30.3
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.2e-23 115.2 438 29.5
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.2e-23 115.2 382 32.5
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 3.4e-23 113.6 405 31.6
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 7.5e-23 112.5 416 35.1
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 9.8e-23 112.1 438 28.8
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.7e-22 111.3 402 28.6
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 2.9e-22 110.5 438 29.0
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 3.7e-22 110.2 385 31.7
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 3.7e-22 110.2 385 31.7
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 4.9e-22 109.8 440 29.1
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 1.4e-21 108.2 257 47.1
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.2e-20 105.1 369 31.4
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 1.2e-20 105.1 432 29.4
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 2.7e-20 104.0 362 29.3
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 3.5e-20 103.6 430 31.9
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 2.3e-19 100.9 439 31.4
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 1.1e-18 98.6 375 28.0
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 3.3e-18 97.1 307 29.3
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 3.6e-17 93.6 234 33.8
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 9.9e-15 85.5 391 27.4
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.9e-14 84.0 304 31.2
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 3.2e-13 80.5 355 28.5
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 5.4e-13 79.7 133 45.1
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.6e-09 68.2 146 34.9
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.1e-08 65.5 105 64.8
Medtr6g046300 Medicago truncatula HOM05D000162 ORTHO05D000090 4.4e-07 60.1 75 57.3
Haze_13037 Corylus avellana HOM05D004568 ORTHO05D005343 3.8e-06 57.0 75 50.7


User provided reference genes

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