Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 1.1e-232 809.7 437 100.0
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 5.9e-125 451.8 486 57.4
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 1.1e-118 431.0 609 49.9
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.5e-117 427.2 681 44.2
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 3.5e-109 399.4 532 50.0
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 4.1e-86 322.8 562 44.1
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 7.8e-85 318.5 574 42.7
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 6.4e-79 298.9 578 41.2
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 1.4e-78 297.7 578 41.5
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 9.5e-75 285.0 616 38.0
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 9.8e-72 275.0 604 38.7
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 3.1e-57 226.9 448 39.7
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 4.4e-56 223.0 729 30.9
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 1.7e-55 221.1 737 31.2
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 2.7e-53 213.8 669 32.7
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.3e-52 211.5 553 34.5
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 6.2e-50 202.6 639 31.8
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 7.6e-48 195.7 644 31.5
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 9.3e-46 188.7 721 28.7
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 1.2e-45 188.3 633 32.5
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 1.6e-45 188.0 721 29.3
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 6.0e-45 186.0 602 31.9
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 7.9e-45 185.7 673 30.3
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 5.1e-44 183.0 192 57.3
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 6.9e-41 172.6 708 28.7
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 3.4e-40 170.2 674 30.0
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 5.8e-40 169.5 499 31.3
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 5.8e-40 169.5 711 29.0
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 9.9e-40 168.7 666 27.3
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 2.2e-39 167.5 663 30.8
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 2.9e-39 167.2 709 28.5
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 2.9e-39 167.2 709 28.5
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.1e-38 165.2 731 28.9
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 2.4e-38 164.1 604 31.0
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 5.5e-38 162.9 466 32.6
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 7.1e-38 162.5 669 29.1
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.6e-37 159.8 684 28.8
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.8e-36 157.9 582 29.6
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 3.0e-36 157.1 629 29.6
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 5.1e-36 156.4 659 28.2
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 1.9e-35 154.5 656 27.3
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 3.7e-34 150.2 676 28.3
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 8.1e-34 149.1 671 28.5
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 9.0e-33 145.6 686 27.6
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 5.8e-32 142.9 556 28.4
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 7.6e-32 142.5 641 27.8
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 1.3e-31 141.7 266 44.0
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 2.2e-31 141.0 569 28.5
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.2e-31 141.0 619 26.8
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 3.8e-31 140.2 558 29.0
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 4.9e-31 139.8 517 29.2
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 9.3e-30 135.6 680 27.6
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 2.1e-29 134.4 306 35.9
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 2.7e-29 134.0 556 28.1
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 3.5e-29 133.7 692 27.3
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.8e-28 131.3 657 28.0
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.8e-28 131.3 556 27.9
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.3e-28 131.0 609 26.4
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 2.3e-28 131.0 609 26.6
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.3e-28 131.0 725 26.8
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 3.0e-28 130.6 583 28.5
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 3.9e-28 130.2 657 28.3
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 3.9e-28 130.2 611 27.7
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 5.1e-28 129.8 131 58.8
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 5.1e-28 129.8 733 25.5
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 8.7e-28 129.0 463 30.7
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 1.1e-27 128.6 220 41.8
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 1.1e-27 128.6 464 30.6
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 4.3e-27 126.7 657 27.9
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 7.4e-27 125.9 709 25.7
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 7.4e-27 125.9 179 46.4
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 9.6e-27 125.6 509 28.3
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 9.6e-27 125.6 766 25.7
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.3e-26 125.2 656 27.7
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 2.8e-26 124.0 460 30.7
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 6.3e-26 122.9 490 29.6
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 1.1e-25 122.1 460 30.7
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.1e-25 122.1 182 42.9
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 1.4e-25 121.7 174 45.4
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 1.8e-25 121.3 611 27.2
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 2.4e-25 120.9 178 44.4
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 5.3e-25 119.8 607 27.7
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 6.9e-25 119.4 177 46.9
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 6.9e-25 119.4 651 26.0
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.5e-24 118.2 168 45.8
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 2.0e-24 117.9 168 45.8
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 4.5e-24 116.7 110 59.1
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.3e-23 115.2 662 27.9
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.7e-23 114.8 532 27.3
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.7e-23 114.8 675 24.9
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 1.7e-23 114.8 162 45.7
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 2.2e-23 114.4 130 51.5
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.8e-23 113.6 235 38.7
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.4e-22 111.7 520 28.5
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.9e-22 111.3 502 27.5
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.2e-21 108.6 165 47.3
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 1.2e-21 108.6 209 39.2
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 4.6e-21 106.7 173 41.0
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 2.3e-20 104.4 655 24.7
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 6.7e-20 102.8 510 27.5
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 6.7e-20 102.8 574 25.3
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.9e-19 101.3 165 40.0
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 2.5e-19 100.9 168 39.3
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 3.3e-19 100.5 474 27.4
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 3.3e-19 100.5 364 29.9
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 4.3e-19 100.1 530 28.3
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 7.4e-19 99.4 177 40.1
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 7.4e-19 99.4 166 42.8
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.6e-18 98.2 163 40.5
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 2.2e-18 97.8 253 34.0
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 2.2e-18 97.8 542 27.5
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 2.2e-18 97.8 155 41.3
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 2.8e-18 97.4 169 42.0
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.8e-18 97.4 163 39.9
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 6.3e-18 96.3 115 51.3
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 1.8e-17 94.7 183 40.4
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 1.2e-16 92.0 670 24.3
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 1.2e-16 92.0 165 39.4
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 3.4e-16 90.5 119 47.1
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 5.9e-16 89.7 172 39.5
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 7.7e-16 89.4 91 53.8
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 2.2e-15 87.8 89 51.7
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 2.9e-15 87.4 167 40.7
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 2.9e-15 87.4 167 40.7
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 3.8e-15 87.0 172 38.4
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 8.5e-15 85.9 84 53.6
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 1.1e-14 85.5 84 52.4
VMungo0720G2920 Vigna mungo HOM05D005042 ORTHO05D006080 1.1e-14 85.5 195 35.4
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.5e-14 84.3 84 52.4
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 5.5e-14 83.2 127 44.1
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 5.5e-14 83.2 153 39.2
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 7.2e-14 82.8 108 46.3
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 9.4e-14 82.4 162 37.0
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 1.2e-13 82.0 167 39.5
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 1.2e-13 82.0 167 39.5
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.2e-13 82.0 164 36.6
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.1e-13 81.3 164 36.6
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 2.1e-13 81.3 150 38.7
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 2.7e-13 80.9 162 38.3
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 2.3e-12 77.8 207 32.9
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 1.1e-11 75.5 68 60.3
VMungo0771G0001 Vigna mungo HOM05D005042 ORTHO05D006080 1.7e-10 71.6 69 65.2
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 4.5e-08 63.5 411 26.0
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 8.5e-07 59.3 115 35.7
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 2.5e-06 57.8 95 40.0


User provided reference genes

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