Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 1.6e-106 389.4 201 100.0
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 1.0e-95 353.6 194 91.2
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 3.2e-94 348.6 197 89.3
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 5.5e-94 347.8 193 91.2
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 4.4e-91 338.2 199 85.4
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 7.4e-91 337.4 198 86.4
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 1.8e-89 332.8 199 83.4
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 5.3e-89 331.3 198 84.3
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 1.7e-87 326.2 211 79.1
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 6.5e-87 324.3 196 84.2
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 6.3e-82 307.8 196 79.6
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 8.2e-82 307.4 196 79.1
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 1.0e-76 290.4 196 73.0
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 1.8e-76 289.7 199 71.4
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 1.8e-76 289.7 197 73.6
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 5.2e-76 288.1 197 72.1
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 6.7e-76 287.7 196 70.9
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 4.4e-75 285.0 196 70.4
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 2.8e-74 282.3 194 71.1
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.8e-74 282.3 194 71.1
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 2.8e-74 282.3 199 67.3
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 2.8e-74 282.3 199 68.8
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 3.7e-74 282.0 199 69.3
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 4.8e-74 281.6 196 69.4
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 6.3e-74 281.2 194 70.6
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 2.4e-73 279.3 199 67.8
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 3.1e-73 278.9 194 69.1
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 7.0e-73 277.7 197 70.1
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 7.0e-73 277.7 195 70.3
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 9.1e-73 277.3 199 68.8
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 9.1e-73 277.3 199 68.8
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 9.1e-73 277.3 193 71.5
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.6e-72 276.6 193 70.5
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 1.6e-72 276.6 195 67.7
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 2.0e-72 276.2 197 67.5
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 7.7e-72 274.2 194 67.0
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 1.3e-71 273.5 196 69.9
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 1.7e-71 273.1 196 67.3
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 2.2e-71 272.7 193 69.4
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 2.9e-71 272.3 197 68.0
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 3.8e-71 271.9 199 65.8
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 8.5e-71 270.8 197 67.5
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 8.5e-71 270.8 197 67.5
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 2.5e-70 269.2 194 64.9
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 4.2e-70 268.5 193 67.4
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 7.2e-70 267.7 249 57.0
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 9.4e-70 267.3 203 66.0
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 1.6e-69 266.5 196 66.8
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 1.6e-69 266.5 196 66.8
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 2.1e-69 266.2 206 64.6
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 1.4e-68 263.5 196 65.8
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 1.8e-68 263.1 194 64.9
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 2.3e-68 262.7 193 68.4
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 5.2e-68 261.5 196 65.3
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 5.2e-68 261.5 194 64.4
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 6.8e-68 261.2 194 63.4
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 1.5e-67 260.0 193 64.8
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 7.5e-67 257.7 196 62.2
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 2.8e-66 255.8 193 64.2
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 3.7e-66 255.4 194 64.4
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 8.3e-66 254.2 250 55.6
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 5.4e-65 251.5 197 61.9
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 1.2e-64 250.4 185 64.9
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 2.7e-64 249.2 197 63.5
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 2.7e-64 249.2 197 61.9
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 3.5e-64 248.8 194 63.9
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 1.0e-63 247.3 197 62.4
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 1.3e-63 246.9 197 62.4
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 3.8e-63 245.4 172 70.9
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 3.8e-63 245.4 194 58.2
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 5.0e-63 245.0 196 61.7
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 4.2e-62 241.9 193 61.7
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 1.2e-61 240.4 197 59.4
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 1.2e-61 240.4 197 59.4
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 1.6e-61 240.0 192 62.0
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 8.0e-61 237.7 196 60.2
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 2.3e-60 236.1 242 52.5
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 6.8e-60 234.6 204 58.8
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 2.0e-59 233.0 200 58.5
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 2.6e-59 232.6 170 67.1
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 5.7e-59 231.5 197 59.9
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 5.7e-59 231.5 197 57.4
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 9.8e-59 230.7 196 61.7
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 4.9e-58 228.4 186 58.6
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.1e-57 227.3 161 66.5
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 5.4e-57 224.9 219 53.0
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 5.4e-57 224.9 219 53.0
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 2.7e-56 222.6 189 58.7
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 3.5e-56 222.2 197 54.8
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 4.3e-54 215.3 194 59.8
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 1.6e-53 213.4 196 55.1
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 3.1e-52 209.1 196 56.1
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 1.2e-45 187.2 136 64.7
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 4.0e-44 182.2 198 44.9
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 2.6e-43 179.5 253 43.5
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 3.4e-43 179.1 138 65.2
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 1.1e-41 174.1 162 56.8
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 4.4e-35 152.1 136 57.4
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 8.3e-34 147.9 134 51.5
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 7.1e-33 144.8 187 40.6
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 4.3e-30 135.6 140 49.3
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 6.8e-28 128.3 102 67.6
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 7.1e-25 118.2 85 70.6
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 2.7e-16 89.7 189 30.7
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 9.6e-14 81.3 92 46.7
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 6.2e-13 78.6 56 67.9
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 6.9e-12 75.1 56 64.3
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 1.7e-10 70.5 82 51.2
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 1.1e-09 67.8 199 28.6
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 3.5e-08 62.8 232 26.3
Cpa.g.sc84.14 Carica papaya HOM05D006655 ORTHO05D007986 2.3e-07 60.1 232 26.3
FvH4_3g28150 Fragaria vesca HOM05D006655 ORTHO05D007986 3.9e-07 59.3 232 26.7
FAN11G1204 Fragaria x ananassa HOM05D006655 ORTHO05D007986 3.9e-07 59.3 232 26.7
RcHm_v2.0_Chr5g0050831 Rosa chinensis HOM05D006655 ORTHO05D007986 5.1e-07 58.9 232 26.7
AagrBONN_evm.TU.Sc2ySwM_228.2449 Anthoceros agrestis HOM05D006655 ORTHO05D007986 6.7e-07 58.5 220 26.4
Pp3c18_4890 Physcomitrium patens HOM05D006655 ORTHO05D007986 6.7e-07 58.5 221 25.8
Duzib168G2063 Durio zibethinus HOM05D006655 ORTHO05D007986 1.1e-06 57.8 236 25.4
GSVIVG01034152001 Vitis vinifera HOM05D003730 ORTHO05D004458 1.1e-06 57.8 117 30.8
Cc01_g05880 Coffea canephora HOM05D006655 ORTHO05D007986 1.5e-06 57.4 244 25.0
Thecc.09G243400 Theobroma cacao HOM05D006655 ORTHO05D007986 1.5e-06 57.4 236 26.3
unitig_8.g4054 Utricularia gibba HOM05D003730 ORTHO05D004458 1.5e-06 57.4 112 31.2
AagrBONN_evm.TU.Sc2ySwM_228.4434 Anthoceros agrestis HOM05D000912 ORTHO05D008392 1.9e-06 57.0 71 42.3
Nitab4.5_0000348g0140 Nicotiana tabacum HOM05D000912 ORTHO05D008392 1.9e-06 57.0 103 32.0
Nitab4.5_0001070g0120 Nicotiana tabacum HOM05D000912 ORTHO05D008392 1.9e-06 57.0 103 32.0
Sp7g29360 Schrenkiella parvula HOM05D006655 ORTHO05D007986 1.9e-06 57.0 234 26.1
SEGI_01007 Sequoiadendron giganteum HOM05D006655 ORTHO05D007986 2.5e-06 56.6 215 26.0
CiPaw.01G092100 Carya illinoinensis HOM05D000912 ORTHO05D008392 3.3e-06 56.2 72 41.7
Glyma.07G133200 Glycine max HOM05D003730 ORTHO05D004458 3.3e-06 56.2 112 33.0
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 3.3e-06 56.2 233 26.6
EL10Ac4g10174 Beta vulgaris HOM05D006655 ORTHO05D007986 4.3e-06 55.8 232 27.6
Pp3c25_2890 Physcomitrium patens HOM05D000912 ORTHO05D008392 4.3e-06 55.8 71 40.8
Zm00001eb062770 Zea mays HOM05D003730 ORTHO05D004458 4.3e-06 55.8 107 34.6
SEGI_09830 Sequoiadendron giganteum HOM05D000912 ORTHO05D008392 5.6e-06 55.5 71 39.4
TAR626G1580 Trochodendron aralioides HOM05D000912 ORTHO05D008392 5.6e-06 55.5 72 38.9
TAR636G1862 Trochodendron aralioides HOM05D003730 ORTHO05D004458 5.6e-06 55.5 107 33.6
VMungo0331G0828 Vigna mungo HOM05D000912 ORTHO05D008392 5.6e-06 55.5 84 35.7
Glyma.07G000500 Glycine max HOM05D000912 ORTHO05D008392 7.4e-06 55.1 84 35.7
Glyma.08G226600 Glycine max HOM05D000912 ORTHO05D008392 7.4e-06 55.1 84 35.7
HanXRQChr01g0003071 Helianthus annuus HOM05D003730 ORTHO05D004458 7.4e-06 55.1 107 32.7
MBI16_g40724_MAGBIO Magnolia biondii HOM05D000912 ORTHO05D008392 7.4e-06 55.1 72 40.3
Phvul.010G165800 Phaseolus vulgaris HOM05D000912 ORTHO05D008392 7.4e-06 55.1 84 35.7
QL01p017764 Quercus lobata HOM05D006655 ORTHO05D007986 7.4e-06 55.1 219 25.1
Hund10632 Selenicereus undatus HOM05D003730 ORTHO05D004458 7.4e-06 55.1 112 32.1
TPR.G38709 Trifolium pratense HOM05D000912 ORTHO05D008392 7.4e-06 55.1 84 35.7
CDE05G1860 Ceratophyllum demersum HOM05D000912 ORTHO05D008392 9.6e-06 54.7 72 40.3
AUR62039838 Chenopodium quinoa HOM05D006655 ORTHO05D007986 9.6e-06 54.7 232 27.2
Nn8g41283 Nelumbo nucifera HOM05D000912 ORTHO05D008392 9.6e-06 54.7 72 38.9


User provided reference genes

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