Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 0.0e+00 1213.0 610 100.0
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.3e-303 1045.8 611 85.9
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 4.0e-281 971.1 610 79.5
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 2.2e-271 938.7 611 76.9
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 1.0e-268 929.9 618 75.4
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 8.1e-266 920.2 611 75.0
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 2.6e-264 915.2 625 74.6
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 7.4e-259 897.1 505 89.1
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 7.2e-238 827.4 618 66.8
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 4.4e-235 818.1 611 68.1
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 5.7e-235 817.8 618 66.3
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 1.3e-234 816.6 632 65.0
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 3.7e-234 815.1 616 65.4
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.4e-233 813.1 632 64.7
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 3.1e-233 812.0 644 64.9
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 5.3e-233 811.2 615 68.0
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.0e-231 807.0 610 65.4
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.1e-229 799.3 618 64.6
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 4.7e-229 798.1 618 64.6
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.0e-228 797.0 614 65.5
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 1.8e-228 796.2 617 64.3
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 2.3e-228 795.8 615 66.5
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 2.3e-228 795.8 610 64.4
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.5e-227 793.1 621 65.4
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 2.0e-227 792.7 620 65.3
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 1.3e-226 790.0 621 64.4
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 2.2e-226 789.3 614 64.8
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 2.8e-226 788.9 682 60.6
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 8.2e-226 787.3 617 64.0
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.1e-225 786.9 619 64.0
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 1.8e-225 786.2 633 62.4
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 4.1e-225 785.0 620 65.3
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.6e-224 783.1 619 63.8
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 4.5e-224 781.6 620 62.6
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.7e-223 779.6 621 64.4
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 6.5e-223 777.7 617 63.7
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 1.1e-222 776.9 620 64.2
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 4.2e-222 775.0 624 62.8
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 8.0e-221 770.8 619 63.5
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.8e-220 769.6 614 62.9
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 3.0e-220 768.8 619 62.5
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 4.0e-220 768.5 618 62.3
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.5e-219 766.5 600 63.3
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.0e-219 766.1 614 63.2
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 3.7e-218 761.9 620 61.0
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 3.7e-218 761.9 612 63.2
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 1.1e-217 760.4 568 67.1
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.2e-216 756.9 617 62.6
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 1.2e-216 756.9 606 64.7
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 2.0e-216 756.1 628 61.5
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 2.7e-216 755.7 622 60.8
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 3.5e-216 755.4 627 61.6
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.0e-215 753.8 619 61.2
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 8.5e-215 750.7 616 62.5
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 7.2e-214 747.7 619 62.0
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 9.4e-214 747.3 613 63.1
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 6.1e-213 744.6 633 59.9
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.0e-212 743.8 568 65.7
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 1.0e-212 743.8 621 61.7
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 2.3e-212 742.7 614 61.2
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 1.2e-211 740.3 618 61.5
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 2.8e-210 735.7 619 60.3
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 6.3e-210 734.6 623 60.0
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 6.3e-210 734.6 626 61.3
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.1e-209 733.8 618 61.3
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 2.7e-208 729.2 623 60.7
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 3.5e-208 728.8 628 59.9
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 1.7e-207 726.5 619 58.8
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 5.0e-207 724.9 619 58.3
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.1e-206 723.8 638 58.0
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 1.1e-206 723.8 620 58.9
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 4.2e-206 721.8 619 59.0
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 4.7e-205 718.4 619 58.3
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 8.0e-205 717.6 617 59.3
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 1.0e-204 717.2 617 59.3
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 2.3e-204 716.1 615 58.9
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.2e-203 713.8 618 59.9
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 9.8e-203 710.7 614 59.1
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 2.2e-202 709.5 603 60.4
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 8.3e-202 707.6 616 58.0
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 3.2e-201 705.7 625 56.6
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.4e-201 704.9 625 58.9
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.2e-200 703.7 622 58.4
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 3.9e-199 698.7 638 55.8
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 6.6e-199 698.0 666 53.6
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 1.0e-196 690.6 624 57.9
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 1.4e-196 690.3 608 59.2
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.3e-194 683.7 640 55.5
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 3.7e-194 682.2 619 56.5
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 7.8e-192 674.5 732 51.1
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.1e-190 670.6 625 56.8
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 3.3e-190 669.1 621 56.7
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 9.5e-190 667.5 623 54.6
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 4.7e-189 665.2 614 57.3
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.3e-188 662.9 614 57.2
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 8.9e-188 661.0 632 55.5
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 2.3e-183 646.4 734 49.0
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.5e-174 617.1 595 53.9
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 1.5e-174 617.1 643 51.8
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 9.6e-174 614.4 620 51.5
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 1.4e-169 600.5 579 54.4
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 8.7e-167 591.3 584 53.3
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 4.3e-166 589.0 615 50.9
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 4.3e-166 589.0 584 52.6
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.3e-159 567.4 643 51.5
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 4.3e-150 535.8 512 55.3
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 9.3e-137 491.5 415 60.7
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.5e-121 440.3 414 57.7
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.1e-116 424.9 413 56.7
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 1.2e-115 421.4 335 60.9
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 1.2e-115 421.4 322 62.4
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.4e-113 411.8 399 56.4
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 4.0e-111 406.4 442 48.6
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.7e-111 405.6 413 55.0
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.5e-110 404.4 413 55.2
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 5.3e-108 396.0 445 48.5
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.9e-107 392.5 414 53.6
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.2e-106 390.6 410 50.0
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.7e-102 375.9 417 51.3
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.0e-94 350.9 400 50.8
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.5e-94 349.0 424 47.6
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 6.6e-90 335.9 564 34.0
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 2.0e-86 324.3 489 35.0
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 1.0e-82 312.0 206 73.3
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.3e-74 285.0 526 35.2
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.9e-69 267.3 521 31.9
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 3.2e-68 263.8 251 53.8
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.1e-67 261.2 499 31.5
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 1.2e-56 225.3 167 67.1
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 5.8e-54 216.5 524 27.3
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 5.8e-54 216.5 237 49.4
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 6.4e-53 213.0 163 65.0
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 9.3e-52 209.1 237 48.5
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 5.6e-49 199.9 206 54.9
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 1.2e-43 182.2 109 82.6
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.4e-39 168.7 135 61.5
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 2.3e-34 151.4 137 55.5
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 5.3e-31 140.2 160 53.1
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.4e-30 137.5 98 68.4
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 5.8e-30 136.7 107 63.6
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.8e-29 134.0 300 34.3
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.1e-25 122.5 100 59.0
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 4.3e-25 120.6 95 62.1
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.6e-22 111.3 74 73.0
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 5.9e-22 110.2 86 64.0
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 3.0e-18 97.8 108 43.5
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 1.6e-16 92.0 70 64.3
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 1.6e-16 92.0 70 64.3
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 2.2e-16 91.7 74 54.1
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 3.4e-14 84.3 69 62.3
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.1e-11 75.1 45 71.1
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.1e-11 75.1 45 71.1
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.8e-10 72.0 48 68.8
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 6.9e-07 60.1 53 56.6
arahy.Tifrunner.gnm1.ann1.4TV6QC Arachis hypogaea HOM05D001779 ORTHO05D001753 7.7e-06 56.6 112 27.7


User provided reference genes

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