Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.1e-77 293.1 143 100.0
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 2.0e-69 265.8 143 88.8
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 3.7e-68 261.5 143 88.1
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 2.0e-66 255.8 145 86.2
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 7.7e-66 253.8 145 85.5
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 2.9e-65 251.9 143 84.6
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 6.1e-63 244.2 145 83.4
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 8.0e-63 243.8 145 85.5
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 1.4e-62 243.0 142 82.4
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 8.8e-62 240.4 143 81.1
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 1.1e-61 240.0 143 80.4
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 2.0e-61 239.2 140 81.4
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 3.3e-61 238.4 143 79.7
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 3.7e-60 235.0 141 77.3
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 3.7e-60 235.0 143 78.3
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 4.8e-60 234.6 143 78.3
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 4.8e-60 234.6 143 77.6
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 8.2e-60 233.8 141 77.3
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 1.8e-59 232.6 141 77.3
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 4.1e-59 231.5 141 77.3
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 1.0e-57 226.9 143 76.2
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 3.8e-57 224.9 141 73.8
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 3.8e-57 224.9 141 75.2
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 5.0e-57 224.6 141 75.2
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 6.5e-57 224.2 139 77.0
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 1.1e-56 223.4 141 74.5
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 1.9e-56 222.6 140 74.3
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 3.2e-56 221.9 141 75.2
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 7.2e-56 220.7 138 76.1
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 7.2e-56 220.7 143 74.1
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 7.2e-56 220.7 141 73.8
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.2e-55 219.9 141 73.0
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.6e-55 219.5 141 73.0
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 1.6e-55 219.5 143 73.4
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 2.7e-55 218.8 139 73.4
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 4.7e-55 218.0 143 73.4
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 6.1e-55 217.6 143 69.9
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 8.0e-55 217.2 143 73.4
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.0e-54 216.9 143 73.4
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 1.0e-54 216.9 141 73.8
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 1.0e-54 216.9 141 73.8
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.4e-54 216.5 141 71.6
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 1.8e-54 216.1 141 72.3
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.3e-54 215.7 141 72.3
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 4.0e-54 214.9 141 70.9
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 5.2e-54 214.5 140 72.9
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 5.2e-54 214.5 141 72.3
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 6.7e-54 214.2 142 71.8
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 8.8e-54 213.8 141 71.6
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.2e-53 213.4 141 68.8
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.2e-53 213.4 141 71.6
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.2e-53 213.4 141 71.6
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 1.5e-53 213.0 141 70.9
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.5e-53 213.0 139 73.4
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.0e-53 212.6 141 70.9
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 2.0e-53 212.6 141 70.9
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.0e-53 212.6 141 70.2
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 2.6e-53 212.2 141 70.2
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 2.6e-53 212.2 141 69.5
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 3.3e-53 211.8 141 70.2
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.7e-53 211.1 141 70.2
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 7.5e-53 210.7 141 70.9
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 7.5e-53 210.7 141 70.2
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 7.5e-53 210.7 141 70.9
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 7.5e-53 210.7 141 71.6
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 9.7e-53 210.3 141 70.9
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 1.3e-52 209.9 141 69.5
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.3e-52 209.9 141 70.2
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.3e-52 209.9 141 70.2
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 2.8e-52 208.8 141 70.2
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.7e-52 208.4 141 70.2
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 3.7e-52 208.4 139 70.5
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 3.7e-52 208.4 139 70.5
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 3.7e-52 208.4 141 70.9
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 4.8e-52 208.0 143 69.2
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 6.3e-52 207.6 143 67.1
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 6.3e-52 207.6 141 69.5
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 6.3e-52 207.6 137 71.5
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 1.1e-51 206.8 141 70.2
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 1.1e-51 206.8 141 70.2
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 1.1e-51 206.8 141 70.2
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.4e-51 206.5 141 68.1
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.4e-51 206.5 141 68.8
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 1.8e-51 206.1 141 69.5
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.8e-51 206.1 142 69.0
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 2.4e-51 205.7 141 68.8
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 2.4e-51 205.7 141 68.8
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 2.4e-51 205.7 141 68.8
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 2.4e-51 205.7 141 69.5
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 2.4e-51 205.7 135 72.6
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 5.3e-51 204.5 141 69.5
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 5.3e-51 204.5 141 68.8
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 5.3e-51 204.5 141 69.5
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 5.3e-51 204.5 141 68.8
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 5.3e-51 204.5 159 63.5
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 7.0e-51 204.1 136 69.9
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 1.2e-50 203.4 141 68.1
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 1.2e-50 203.4 141 68.1
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 1.2e-50 203.4 141 68.1
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 1.2e-50 203.4 141 68.1
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 4.5e-50 201.4 143 66.4
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 5.9e-50 201.1 141 67.4
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 5.9e-50 201.1 143 66.4
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 5.9e-50 201.1 143 66.4
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 7.7e-50 200.7 138 66.7
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 1.7e-49 199.5 140 69.3
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.7e-49 199.5 138 66.7
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.7e-49 199.5 141 66.0
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.2e-49 199.1 138 66.7
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 2.2e-49 199.1 141 65.2
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 5.0e-49 198.0 142 66.2
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 6.5e-49 197.6 192 54.7
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 6.5e-49 197.6 192 54.7
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 1.1e-48 196.8 138 65.2
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 1.5e-48 196.4 135 66.7
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 1.5e-48 196.4 146 67.8
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 2.5e-48 195.7 141 63.8
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 4.2e-48 194.9 138 67.4
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 4.2e-48 194.9 141 67.4
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 5.5e-48 194.5 141 63.8
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 7.2e-48 194.1 141 66.0
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 9.4e-48 193.7 146 67.8
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.6e-47 191.8 169 57.4
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 8.0e-47 190.7 190 51.6
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 2.3e-46 189.1 132 65.9
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.0e-46 188.7 141 61.7
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 3.0e-46 188.7 132 65.2
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.5e-45 186.4 141 61.7
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 9.8e-45 183.7 141 64.5
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 9.8e-45 183.7 141 64.5
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 3.7e-44 181.8 143 59.4
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 3.7e-44 181.8 145 61.4
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 4.8e-44 181.4 143 63.6
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 6.3e-44 181.0 147 63.9
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 6.3e-44 181.0 138 63.8
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 2.4e-43 179.1 116 73.3
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 2.7e-42 175.6 136 63.2
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.3e-41 173.3 135 60.0
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 6.5e-41 171.0 141 61.7
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 1.5e-40 169.9 139 59.7
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 7.2e-40 167.5 141 57.4
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 8.0e-39 164.1 174 51.1
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.1e-35 153.7 130 57.7
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.1e-35 152.1 138 56.5
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 4.1e-35 151.8 130 56.9
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 5.4e-35 151.4 125 59.2
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.0e-34 149.4 134 56.0
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 1.3e-33 146.7 107 62.6
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 8.6e-33 144.1 284 34.2
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 5.6e-32 141.4 137 50.4
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 7.3e-32 141.0 137 50.4
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 9.5e-32 140.6 139 50.4
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 4.7e-31 138.3 141 48.2
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 2.4e-27 125.9 120 50.8
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 2.5e-24 115.9 126 47.6
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.1e-22 110.5 73 67.1
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 1.8e-22 109.8 79 67.1
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 1.8e-22 109.8 79 67.1
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.4e-20 101.3 103 49.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.4e-20 101.3 103 49.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.4e-20 101.3 103 49.5
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.1e-19 100.5 67 68.7
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 5.4e-19 98.2 117 43.6
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 3.5e-18 95.5 67 67.2
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 4.6e-18 95.1 114 46.5
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 3.3e-16 89.0 123 41.5
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 3.3e-16 89.0 59 69.5
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 3.3e-16 89.0 59 69.5
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 5.6e-16 88.2 87 50.6
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.6e-15 86.7 76 55.3
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 2.6e-13 79.3 76 51.3
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 2.6e-13 79.3 115 43.5
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 3.2e-11 72.4 118 41.5
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 1.6e-10 70.1 65 53.8
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 3.5e-10 68.9 65 52.3
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.0e-09 65.9 41 70.7
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 5.1e-09 65.1 107 38.3
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 6.6e-09 64.7 40 65.0
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.1e-08 63.9 41 68.3
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 1.2e-07 60.5 64 50.0
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.8e-06 56.6 34 70.6
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 3.1e-06 55.8 32 75.0
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.1e-06 55.8 36 66.7


User provided reference genes

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