Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 2.4e-306 1054.7 537 100.0
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 2.7e-281 971.5 544 91.4
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 1.4e-277 959.1 542 90.6
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 7.4e-271 936.8 550 87.1
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 6.9e-269 930.2 545 86.8
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 2.6e-268 928.3 543 87.5
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 1.0e-267 926.4 554 84.7
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 3.8e-267 924.5 549 86.3
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 5.5e-266 920.6 549 85.8
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 5.5e-266 920.6 549 85.6
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 2.0e-263 912.1 547 84.3
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 8.2e-262 906.7 547 83.9
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 3.0e-256 888.3 550 81.1
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.5e-252 875.9 550 79.6
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.7e-251 872.5 550 79.3
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 5.5e-250 867.5 566 77.6
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 9.4e-250 866.7 550 79.5
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 6.1e-249 864.0 547 78.4
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 6.1e-249 864.0 549 79.2
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 1.8e-248 862.4 554 78.9
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 5.2e-248 860.9 547 78.1
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 1.5e-247 859.4 550 77.8
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 2.6e-247 858.6 594 74.9
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 4.8e-246 854.4 551 77.9
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 8.2e-246 853.6 577 75.2
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 8.2e-246 853.6 568 76.6
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 1.1e-245 853.2 578 75.6
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 7.0e-245 850.5 556 77.2
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 2.0e-244 849.0 550 77.5
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 2.0e-244 849.0 555 76.4
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 7.7e-244 847.0 560 77.5
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 1.7e-243 845.9 554 77.4
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.9e-242 842.4 549 76.0
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.5e-242 842.0 555 76.2
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.0e-240 836.6 563 76.4
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 1.4e-240 836.3 529 79.0
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 6.8e-240 833.9 551 76.2
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 6.8e-240 833.9 523 78.0
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 8.8e-240 833.6 549 76.5
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 1.5e-239 832.8 573 75.2
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 2.0e-239 832.4 530 78.1
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 2.6e-239 832.0 549 75.6
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 2.8e-238 828.6 530 77.4
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 3.7e-238 828.2 550 75.5
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 8.3e-238 827.0 539 78.1
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 3.1e-237 825.1 551 75.5
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 3.1e-237 825.1 545 75.6
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 4.1e-237 824.7 551 74.8
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 9.1e-237 823.5 552 75.2
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 9.1e-237 823.5 551 75.0
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 7.7e-236 820.5 532 78.0
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 1.0e-235 820.1 597 72.2
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 6.5e-235 817.4 507 78.9
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 1.1e-234 816.6 555 74.1
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 1.9e-234 815.8 533 76.2
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 3.2e-234 815.1 539 76.1
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 7.2e-234 813.9 529 76.9
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 2.1e-233 812.4 553 73.8
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 3.6e-233 811.6 516 77.3
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 6.1e-233 810.8 491 79.0
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 1.2e-231 806.6 443 91.2
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 1.7e-230 802.7 552 73.0
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 4.9e-230 801.2 532 76.5
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 6.3e-230 800.8 555 74.4
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 2.0e-228 795.8 549 73.4
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 1.0e-227 793.5 555 72.6
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 1.0e-227 793.5 530 74.0
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 1.5e-226 789.6 530 74.5
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 5.5e-226 787.7 555 72.1
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.6e-225 786.2 587 70.9
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 2.1e-225 785.8 665 63.3
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 2.8e-225 785.4 561 71.3
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 1.4e-224 783.1 548 73.0
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 5.2e-224 781.2 462 81.8
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 8.9e-224 780.4 539 72.0
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 2.6e-223 778.9 531 72.5
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.9e-222 774.6 609 67.5
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 6.8e-216 754.2 512 74.0
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.9e-214 748.8 512 73.4
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 2.4e-213 745.7 550 70.7
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 3.9e-211 738.4 538 71.9
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 5.6e-210 734.6 543 69.6
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.8e-208 729.6 491 74.7
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 6.8e-208 727.6 543 74.6
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 7.5e-207 724.2 578 65.7
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 6.4e-206 721.1 511 72.8
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 1.1e-202 710.3 440 78.6
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 1.5e-202 709.9 470 74.0
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 2.5e-202 709.1 483 74.9
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 2.5e-202 709.1 587 65.6
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 9.5e-202 707.2 474 74.9
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 2.9e-198 695.7 506 67.2
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 1.2e-196 690.3 507 67.5
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.2e-188 663.7 485 71.5
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 1.9e-186 656.4 556 64.7
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 3.6e-185 652.1 466 69.5
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 8.1e-185 651.0 505 62.0
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 8.1e-185 651.0 500 64.8
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 1.1e-184 650.6 569 62.2
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 4.6e-180 635.2 515 62.3
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 6.0e-180 634.8 515 65.6
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 8.1e-177 624.4 423 72.3
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 8.7e-171 604.4 469 66.5
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 1.9e-165 586.6 455 68.8
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 7.1e-165 584.7 343 86.3
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 5.9e-159 565.1 486 59.1
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 1.3e-153 547.4 372 76.6
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 1.3e-153 547.4 490 57.6
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 3.8e-150 535.8 322 82.0
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 5.5e-141 505.4 322 77.0
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 4.2e-133 479.2 293 82.3
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.0e-131 473.0 478 47.7
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 1.5e-130 470.7 259 94.2
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 2.1e-116 423.7 271 80.1
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.8e-112 410.6 443 52.1
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.3e-110 404.4 401 59.4
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 4.3e-101 372.9 228 82.5
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 4.1e-88 329.7 205 80.5
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 3.4e-82 310.1 210 72.4
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 2.7e-79 300.4 183 81.4
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 3.6e-76 290.0 209 69.4
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 6.9e-75 285.8 188 72.9
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 1.1e-72 278.5 209 67.5
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 3.2e-72 276.9 472 37.1
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 4.3e-61 240.0 139 87.8
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 8.1e-60 235.7 134 77.6
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 1.0e-54 218.8 248 53.6
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 2.1e-52 211.1 229 52.8
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 9.0e-51 205.7 436 33.5
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 6.3e-44 183.0 136 70.6
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 1.2e-42 178.7 89 94.4
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 1.2e-42 178.7 89 94.4
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 6.7e-38 162.9 357 33.1
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 6.9e-35 152.9 146 57.5
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 5.1e-30 136.7 114 65.8
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 3.3e-29 134.0 123 57.7
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 5.0e-25 120.2 69 82.6
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 1.6e-23 115.2 150 47.3
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 1.0e-22 112.5 66 84.8
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 8.2e-20 102.8 82 61.0
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 1.1e-19 102.4 140 43.6
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.4e-19 102.1 64 76.6
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 1.8e-19 101.7 68 75.0
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 9.1e-19 99.4 52 88.5
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 1.6e-18 98.6 119 44.5
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 2.6e-18 97.8 57 82.5
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 4.5e-18 97.1 117 51.3
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 1.5e-16 92.0 106 51.9
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.2e-13 82.4 85 58.8
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 1.5e-13 82.0 61 67.2
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 2.6e-13 81.3 58 74.1
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 4.5e-10 70.5 49 71.4
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 4.5e-10 70.5 46 69.6
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 4.7e-07 60.5 72 44.4
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 1.0e-06 59.3 43 65.1
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 4.0e-06 57.4 38 68.4
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 6.8e-06 56.6 38 68.4


User provided reference genes

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