Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04821_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004239 1.3e-90 336.3 154 100.0
Medtr5g041750 Medicago truncatula HOM05D001860 ORTHO05D004239 1.2e-69 266.5 136 86.0
Psat2g116800 Pisum sativum HOM05D001860 ORTHO05D004239 5.5e-62 241.1 136 82.4
arahy.Tifrunner.gnm1.ann1.RS14VD Arachis hypogaea HOM05D001860 ORTHO05D004239 4.7e-61 238.0 140 79.3
arahy.Tifrunner.gnm1.ann1.A2Z21V Arachis hypogaea HOM05D001860 ORTHO05D004239 4.0e-60 235.0 135 80.7
Haze_11993 Corylus avellana HOM05D001860 ORTHO05D004239 2.9e-58 228.8 141 73.0
TPR.G39239 Trifolium pratense HOM05D001860 ORTHO05D004239 9.2e-57 223.8 137 75.2
Duzib268G0034 Durio zibethinus HOM05D001860 ORTHO05D004239 1.8e-52 209.5 142 67.6
ClCG05G024140 Citrullus lanatus HOM05D001860 ORTHO05D004239 2.9e-50 202.2 139 68.3
CsaV3_5G032880 Cucumis sativus L. HOM05D001860 ORTHO05D004239 2.9e-50 202.2 136 69.9
Lj2g0002980 Lotus japonicus HOM05D001860 ORTHO05D004239 9.2e-49 197.2 111 80.2
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.6e-48 196.4 133 68.4
Sed0006733 Sechium edule HOM05D001860 ORTHO05D004239 3.9e-47 191.8 135 67.4
Rhsim12G0064500 Rhododendron simsii HOM05D001860 ORTHO05D004239 1.1e-46 190.3 142 60.6
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.3e-46 188.7 153 60.8
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 7.3e-46 187.6 135 65.9
Glyma.01G050400 Glycine max HOM05D001860 ORTHO05D004239 1.6e-45 186.4 110 79.1
Glyma.02G109200 Glycine max HOM05D001860 ORTHO05D004239 1.6e-45 186.4 110 80.0
Hma1.2p1_1079F.1_g254980 Hydrangea macrophylla HOM05D001860 ORTHO05D004239 1.6e-45 186.4 135 63.0
Eucgr.B03212 Eucalyptus grandis HOM05D001860 ORTHO05D004239 2.1e-45 186.0 139 64.0
vmacro01266 Vaccinium macrocarpon HOM05D001860 ORTHO05D004239 2.8e-45 185.7 137 61.3
SGA_v2.0_scaffold172G38958 Striga asiatica HOM05D001860 ORTHO05D004239 6.2e-45 184.5 137 63.5
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.1e-45 184.1 135 65.9
Migut.L01274 Erythranthe guttata HOM05D001860 ORTHO05D004239 1.1e-44 183.7 129 65.1
Lsat_1_v5_gn_3_52080 Lactuca sativa HOM05D001860 ORTHO05D004239 1.8e-44 183.0 132 63.6
TWI79G1540 Tripterygium wilfordii HOM05D001860 ORTHO05D004239 3.1e-44 182.2 138 64.5
Phvul.002G083400 Phaseolus vulgaris HOM05D001860 ORTHO05D004239 6.8e-44 181.0 110 75.5
QL03p068530 Quercus lobata HOM05D001860 ORTHO05D004239 7.5e-43 177.6 112 72.3
Prupe.1G276800 Prunus persica HOM05D001860 ORTHO05D004239 2.9e-42 175.6 123 67.5
Lsat_1_v5_gn_3_52060 Lactuca sativa HOM05D001860 ORTHO05D004239 3.7e-42 175.3 135 62.2
VMungo1215G3190 Vigna mungo HOM05D001860 ORTHO05D004239 3.7e-42 175.3 105 76.2
ECA233G2043 Erigeron canadensis HOM05D001860 ORTHO05D004239 4.9e-42 174.9 131 61.1
Nitab4.5_0004623g0030 Nicotiana tabacum HOM05D001860 ORTHO05D004239 2.4e-41 172.6 127 65.4
Actinidia33208 Actinidia chinensis HOM05D001860 ORTHO05D004239 1.2e-40 170.2 131 60.3
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.2e-40 170.2 103 75.7
PGR119G0060 Punica granatum HOM05D001860 ORTHO05D004239 2.7e-40 169.1 137 59.9
MD13G1070100 Malus domestica HOM05D001860 ORTHO05D004239 4.3e-38 161.8 114 66.7
MD16G1070500 Malus domestica HOM05D001860 ORTHO05D004239 4.3e-38 161.8 114 68.4
Oeu028274.1 Olea europaea HOM05D001860 ORTHO05D004239 2.8e-37 159.1 129 58.9
Ciclev10031680m.g Citrus clementina HOM05D001860 ORTHO05D004239 4.7e-37 158.3 110 67.3
Dinv34137 Davidia involucrata HOM05D001860 ORTHO05D004239 2.0e-35 152.9 110 63.6
Gohir.A13G076600 Gossypium hirsutum HOM05D001860 ORTHO05D004239 2.6e-35 152.5 110 64.5
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 7.6e-35 151.0 125 56.8
Gohir.D13G076300 Gossypium hirsutum HOM05D001860 ORTHO05D004239 7.6e-35 151.0 105 67.6
CANSAT64G2374 Cannabis sativa HOM05D001860 ORTHO05D004239 1.1e-33 147.1 115 63.5
MSTRG.714 Avicennia marina HOM05D001860 ORTHO05D004239 5.4e-33 144.8 109 63.3
TWI75G1461 Tripterygium wilfordii HOM05D001860 ORTHO05D004239 1.2e-32 143.7 110 65.5
Actinidia19882 Actinidia chinensis HOM05D001860 ORTHO05D004239 1.6e-32 143.3 122 54.9
Lj6A786T63 Lonicera japonica HOM05D001860 ORTHO05D004239 1.6e-32 143.3 112 59.8
HanXRQChr17g0545271 Helianthus annuus HOM05D001860 ORTHO05D004239 2.7e-32 142.5 104 63.5
Sopen05g003680 Solanum pennellii HOM05D001860 ORTHO05D004239 2.7e-32 142.5 104 63.5
PGSC0003DMG400018432 Solanum tuberosum HOM05D001860 ORTHO05D004239 2.7e-32 142.5 104 63.5
ECA246G2415 Erigeron canadensis HOM05D001860 ORTHO05D004239 1.0e-31 140.6 110 57.3
CAN.G1596.4 Capsicum annuum HOM05D001860 ORTHO05D004239 1.7e-31 139.8 103 63.1
Nitab4.5_0000040g0150 Nicotiana tabacum HOM05D001860 ORTHO05D004239 8.6e-31 137.5 105 63.8
THA.LOC104805168 Tarenaya hassleriana HOM05D001860 ORTHO05D004239 1.1e-30 137.1 131 53.4
Peaxi162Scf00222g00063 Petunia axillaris HOM05D001860 ORTHO05D004239 2.5e-30 136.0 104 60.6
HanXRQChr08g0210801 Helianthus annuus HOM05D001860 ORTHO05D004239 1.6e-29 133.3 104 55.8
TWI31G0976 Tripterygium wilfordii HOM05D001860 ORTHO05D004239 2.8e-29 132.5 110 60.0
AUR62005815 Chenopodium quinoa HOM05D001860 ORTHO05D004239 1.8e-28 129.8 111 51.4
AUR62032809 Chenopodium quinoa HOM05D001860 ORTHO05D004239 6.8e-28 127.9 110 50.9
TAR622G0370 Trochodendron aralioides HOM05D001860 ORTHO05D004239 1.2e-27 127.1 108 58.3
Hund25223 Selenicereus undatus HOM05D001860 ORTHO05D004239 1.5e-27 126.7 109 51.4
Sc11g0002050 Simmondsia chinensis HOM05D001860 ORTHO05D004239 2.6e-27 125.9 112 52.7
Cpa.g.sc350.3 Carica papaya HOM05D001860 ORTHO05D004239 4.4e-27 125.2 112 57.1
EL10Ac6g13235 Beta vulgaris HOM05D001860 ORTHO05D004239 9.9e-27 124.0 110 50.0
Actinidia12295 Actinidia chinensis HOM05D001860 ORTHO05D004239 2.2e-26 122.9 103 59.2
Thecc.02G343600 Theobroma cacao HOM05D001860 ORTHO05D004239 1.1e-25 120.6 110 54.5
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 9.3e-25 117.5 85 65.9
TAR374G0160 Trochodendron aralioides HOM05D000974 ORTHO05D004239 9.3e-25 117.5 141 48.2
TAR315G0003 Trochodendron aralioides HOM05D001860 ORTHO05D004239 1.6e-24 116.7 111 53.2
MBI05_g10767_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004239 7.8e-24 114.4 111 51.4
Duzib251G0636 Durio zibethinus HOM05D001860 ORTHO05D004239 1.7e-23 113.2 110 52.7
Manes.05G104000 Manihot esculenta HOM05D001860 ORTHO05D004239 2.5e-22 109.4 114 50.9
Aqoxy3G03435 Aquilegia oxysepala HOM05D001860 ORTHO05D004239 9.0e-20 100.9 105 49.5
Oeu055107.1 Olea europaea HOM05D001860 ORTHO05D004239 9.0e-20 100.9 150 38.0
Os10g0406200 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004239 5.8e-19 98.2 135 43.0
Ah.03g134870 Amaranthus hybridus HOM05D001860 ORTHO05D004239 7.6e-19 97.8 72 59.7
PSO339G1927 Papaver somniferum HOM05D001860 ORTHO05D004239 9.9e-19 97.4 124 45.2
Zm00001eb223270 Zea mays HOM05D001860 ORTHO05D004239 2.2e-18 96.3 134 43.3
ATR0564G267 Amborella trichopoda HOM05D001860 ORTHO05D004239 3.8e-18 95.5 105 46.7
Cpa.g.sc51.86 Carica papaya HOM05D001860 ORTHO05D004239 2.1e-16 89.7 123 43.1
Dinv14593 Davidia involucrata HOM05D001860 ORTHO05D004239 2.7e-16 89.4 128 44.5
A09p62390 Brassica napus HOM05D001860 ORTHO05D004239 1.7e-15 86.7 134 40.3
CARHR014580 Cardamine hirsuta HOM05D001860 ORTHO05D004239 3.9e-15 85.5 135 40.7
TAR369G0797 Trochodendron aralioides HOM05D001860 ORTHO05D004239 3.9e-15 85.5 109 44.0
Sp1g12520 Schrenkiella parvula HOM05D001860 ORTHO05D004239 6.6e-15 84.7 76 56.6
Thhalv10008532m.g Eutrema salsugineum HOM05D001860 ORTHO05D004239 1.1e-14 84.0 76 57.9
BraA09t41604Z Brassica rapa HOM05D001860 ORTHO05D004239 1.5e-14 83.6 92 50.0
TAR623G1369 Trochodendron aralioides HOM05D001860 ORTHO05D004239 1.5e-14 83.6 115 40.9
Atru.chr11.1761 Acer truncatum HOM05D001860 ORTHO05D004239 1.9e-14 83.2 76 59.2
AagrBONN_evm.TU.Sc2ySwM_344.4323 Anthoceros agrestis HOM05D001860 ORTHO05D004239 1.9e-14 83.2 123 43.9
BcaC07g41592 Brassica carinata HOM05D001860 ORTHO05D004239 3.3e-14 82.4 92 48.9
BcaC07g41595 Brassica carinata HOM05D001860 ORTHO05D004239 3.3e-14 82.4 92 48.9
Nn2g15907 Nelumbo nucifera HOM05D001860 ORTHO05D004239 3.3e-14 82.4 98 49.0
C08p45960 Brassica napus HOM05D001860 ORTHO05D004239 4.3e-14 82.0 92 48.9
BolC8t52147H Brassica oleracea HOM05D001860 ORTHO05D004239 4.3e-14 82.0 92 48.9
DCAR_013696 Daucus carota HOM05D001860 ORTHO05D004239 5.6e-14 81.6 138 39.9
SEGI_36747 Sequoiadendron giganteum HOM05D001860 ORTHO05D004239 5.6e-14 81.6 105 44.8
AL1G26050 Arabidopsis lyrata HOM05D001860 ORTHO05D004239 9.6e-14 80.9 76 55.3
MBI19_g24078_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004239 9.6e-14 80.9 105 45.7
BcaB08g34374 Brassica carinata HOM05D001860 ORTHO05D004239 4.8e-13 78.6 76 51.3
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 4.8e-13 78.6 117 42.7
Carub.0001s1385 Capsella rubella HOM05D001860 ORTHO05D004239 6.2e-13 78.2 76 53.9
AT1G14180 Arabidopsis thaliana HOM05D001860 ORTHO05D004239 1.1e-12 77.4 76 53.9
Lj2A356T44 Lonicera japonica HOM05D001860 ORTHO05D004239 1.8e-12 76.6 136 35.3
Duzib128G1505 Durio zibethinus HOM05D001860 ORTHO05D004239 2.4e-12 76.3 95 46.3
Nn7g35793 Nelumbo nucifera HOM05D001860 ORTHO05D004239 2.4e-12 76.3 94 46.8
BcaC05g25315 Brassica carinata HOM05D001860 ORTHO05D004239 1.5e-11 73.6 71 53.5
C05p11970 Brassica napus HOM05D001860 ORTHO05D004239 1.5e-11 73.6 71 53.5
BolC5t29953H Brassica oleracea HOM05D001860 ORTHO05D004239 1.5e-11 73.6 71 53.5
A06p10170 Brassica napus HOM05D001860 ORTHO05D004239 4.5e-11 72.0 72 55.6
CDE04G0155 Ceratophyllum demersum HOM05D001860 ORTHO05D004239 7.6e-11 71.2 97 44.3
Zm00001eb395410 Zea mays HOM05D001860 ORTHO05D004239 7.6e-11 71.2 116 39.7
Duzib106G1690 Durio zibethinus HOM05D001860 ORTHO05D004239 4.9e-10 68.6 104 41.3
BraA06t24201Z Brassica rapa HOM05D001860 ORTHO05D004239 8.4e-10 67.8 72 52.8
COL.COLO4_08624 Corchorus olitorius HOM05D001860 ORTHO05D004239 8.4e-10 67.8 95 43.2
Gohir.A11G239600 Gossypium hirsutum HOM05D001860 ORTHO05D004239 1.9e-09 66.6 95 43.2
Gorai.007G267000 Gossypium raimondii HOM05D001860 ORTHO05D004239 1.9e-09 66.6 95 43.2
Os03g0326300 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004239 2.4e-09 66.2 94 40.4
CDE07G1998 Ceratophyllum demersum HOM05D001860 ORTHO05D004239 3.2e-09 65.9 95 42.1
Gohir.D11G249300 Gossypium hirsutum HOM05D001860 ORTHO05D004239 2.1e-08 63.2 95 42.1
TWI32G0146 Tripterygium wilfordii HOM05D001860 ORTHO05D004239 3.5e-08 62.4 95 41.1
Pp3c19_13250 Physcomitrium patens HOM05D001507 ORTHO05D004239 1.3e-07 60.5 99 39.4
Thecc.05G258500 Theobroma cacao HOM05D001860 ORTHO05D004239 2.3e-07 59.7 95 40.0
Sabra13G0053800 Salix brachista HOM05D001860 ORTHO05D004239 4.3e-06 55.5 91 35.2


User provided reference genes

Program Settings