Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 2.1e-210 735.7 459 100.0
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 4.1e-177 625.2 529 77.3
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 6.5e-175 617.8 545 73.9
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 6.1e-173 611.3 535 74.6
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 1.5e-158 563.5 522 70.7
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.5e-158 563.5 522 70.7
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 4.0e-156 555.4 522 67.2
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 1.7e-151 540.0 525 68.8
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 1.2e-144 517.3 542 63.5
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 1.2e-144 517.3 525 65.0
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 5.2e-140 501.9 531 70.2
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 2.4e-137 493.0 541 61.7
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.0e-135 487.6 548 60.6
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 9.5e-134 481.1 562 58.9
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 2.8e-133 479.6 534 62.9
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 1.4e-132 477.2 435 72.6
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 1.8e-132 476.9 540 60.7
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 2.3e-132 476.5 550 60.4
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 1.5e-131 473.8 528 57.8
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 1.9e-129 466.8 560 57.5
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 6.0e-128 461.8 501 59.3
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 6.0e-128 461.8 544 60.3
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 1.7e-127 460.3 542 56.6
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 3.9e-127 459.1 547 56.5
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 5.0e-127 458.8 523 57.9
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 1.2e-125 454.1 539 57.7
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.1e-124 451.1 515 62.1
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 5.2e-124 448.7 519 58.6
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 7.5e-123 444.9 530 57.5
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 2.2e-122 443.4 537 57.7
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 6.4e-122 441.8 543 56.7
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.4e-121 439.9 538 57.4
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 3.2e-121 439.5 535 58.3
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.6e-120 437.2 550 54.0
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 2.3e-119 433.3 536 56.9
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 8.6e-119 431.4 537 55.9
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 5.6e-118 428.7 522 57.9
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 6.2e-117 425.2 540 56.5
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 8.1e-117 424.9 497 57.3
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 1.8e-116 423.7 644 50.5
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 1.2e-115 421.0 421 69.8
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 2.0e-115 420.2 523 56.6
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 3.4e-115 419.5 542 56.3
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 9.9e-115 417.9 536 55.6
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 3.2e-113 412.9 489 56.4
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 3.9e-111 406.0 559 54.4
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 1.1e-110 404.4 529 57.3
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 1.1e-110 404.4 413 66.1
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 4.3e-110 402.5 551 54.8
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 2.8e-109 399.8 544 54.0
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 4.7e-109 399.1 500 54.2
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 6.2e-109 398.7 568 52.1
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 5.2e-108 395.6 535 54.2
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 1.2e-107 394.4 542 54.2
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 7.6e-107 391.7 489 53.2
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 4.9e-106 389.0 560 54.1
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 4.2e-105 386.0 423 62.6
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 4.2e-105 386.0 433 60.5
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 1.2e-104 384.4 543 53.8
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 4.6e-104 382.5 495 54.5
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 1.3e-103 380.9 458 59.4
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 1.1e-102 377.9 493 57.2
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.9e-102 377.1 478 56.1
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 4.8e-101 372.5 537 51.2
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.7e-98 364.0 543 47.7
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 4.9e-98 362.5 521 52.8
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 4.6e-96 355.9 539 51.4
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 3.0e-95 353.2 574 49.5
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.5e-94 350.9 480 54.0
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 1.5e-94 350.9 564 50.2
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 3.7e-93 346.3 509 47.3
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 3.1e-92 343.2 529 44.8
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 6.9e-92 342.0 573 44.3
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 9.0e-92 341.7 536 49.1
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 4.5e-91 339.3 560 43.6
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 9.9e-91 338.2 526 45.1
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 2.2e-90 337.0 505 52.5
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 8.4e-90 335.1 508 45.3
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 1.4e-89 334.3 525 43.6
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 7.1e-89 332.0 531 49.2
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 9.3e-89 331.6 526 52.1
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 2.7e-88 330.1 532 50.4
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 1.0e-87 328.2 563 48.1
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 2.3e-87 327.0 495 50.7
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.1e-86 324.7 450 50.2
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 3.7e-85 319.7 535 43.6
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 1.2e-83 314.7 546 44.0
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.0e-83 313.9 521 44.1
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 2.2e-82 310.5 478 50.0
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 1.1e-81 308.1 528 49.4
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 1.0e-79 301.6 530 45.8
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 1.8e-79 300.8 534 47.2
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 5.1e-79 299.3 531 46.9
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 8.7e-79 298.5 530 45.7
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 8.7e-79 298.5 530 45.7
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 2.8e-77 293.5 570 40.9
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 7.2e-73 278.9 365 57.3
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 3.9e-71 273.1 352 61.9
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 5.7e-70 269.2 298 55.0
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 9.7e-70 268.5 475 42.3
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 1.4e-68 264.6 401 48.6
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 4.5e-67 259.6 308 52.3
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 1.9e-65 254.2 167 81.4
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 3.6e-64 250.0 381 52.2
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 1.6e-48 198.0 210 57.1
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 1.6e-48 198.0 138 77.5
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 2.8e-45 187.2 203 54.7
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 3.1e-44 183.7 226 47.8
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 9.1e-44 182.2 172 61.0
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 3.2e-41 173.7 201 55.7
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 2.4e-36 157.5 205 55.1
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 2.0e-35 154.5 129 68.2
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 2.9e-34 150.6 256 40.6
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 4.2e-33 146.7 180 53.9
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 5.5e-33 146.4 212 41.0
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 5.5e-33 146.4 232 41.4
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 9.5e-33 145.6 229 41.9
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 8.3e-29 132.5 263 36.5
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 3.1e-28 130.6 303 34.3
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 7.8e-27 125.9 79 82.3
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 1.0e-26 125.6 209 42.6
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 1.6e-24 118.2 78 78.2
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 3.7e-21 107.1 303 30.4
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 1.9e-20 104.8 225 35.6
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.9e-20 104.8 69 76.8
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 2.7e-19 100.9 103 58.3
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 3.9e-18 97.1 117 59.8
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 7.3e-17 92.8 109 49.5
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 2.8e-16 90.9 172 43.6
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 3.1e-15 87.4 207 29.0
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 4.0e-15 87.0 203 29.6
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 2.2e-13 81.3 48 75.0
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 2.9e-13 80.9 96 46.9
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 6.4e-13 79.7 46 84.8
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 1.1e-12 79.0 100 48.0
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 1.9e-12 78.2 109 45.9
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 7.0e-12 76.3 284 26.4
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.6e-11 75.1 254 26.0
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 1.6e-11 75.1 101 52.5
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 5.0e-10 70.1 75 57.3
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 8.6e-10 69.3 77 51.9
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 1.5e-09 68.6 56 57.1
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 8.1e-08 62.8 68 52.9
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 2.6e-06 57.8 61 52.5
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 2.6e-06 57.8 46 69.6
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 2.6e-06 57.8 54 66.7
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 2.6e-06 57.8 51 58.8
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 3.4e-06 57.4 213 26.8
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 7.5e-06 56.2 76 42.1


User provided reference genes

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