Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 1.1e-101 373.2 189 100.0
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 8.9e-62 240.7 198 71.7
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 2.9e-52 209.1 191 66.0
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 2.7e-50 202.6 194 66.5
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 4.4e-45 185.3 196 58.2
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 4.6e-42 175.3 198 58.1
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 4.4e-37 158.7 188 54.3
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 2.3e-33 146.4 189 50.8
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 8.7e-33 144.4 194 52.1
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 3.1e-30 136.0 192 50.5
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 2.2e-28 129.8 199 45.7
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.2e-27 125.9 200 45.0
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 7.1e-27 124.8 191 45.0
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 7.1e-27 124.8 189 45.5
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 1.6e-26 123.6 188 46.8
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.6e-26 122.1 186 45.2
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 4.6e-26 122.1 181 47.0
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.6e-26 122.1 191 45.5
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 7.9e-26 121.3 197 44.2
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 7.9e-26 121.3 197 44.2
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.0e-25 120.9 192 44.3
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 1.8e-25 120.2 188 46.8
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.9e-24 116.7 192 43.8
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 4.3e-24 115.5 185 45.4
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 5.6e-24 115.2 181 45.3
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 7.4e-24 114.8 188 44.7
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 7.4e-24 114.8 179 44.1
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.3e-23 114.0 185 42.7
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.1e-22 110.9 179 43.6
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.1e-22 110.9 179 43.0
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.4e-22 110.5 181 45.9
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 1.4e-22 110.5 208 42.8
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 2.4e-22 109.8 185 42.2
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 2.4e-22 109.8 195 41.5
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 5.3e-22 108.6 149 47.7
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 6.9e-22 108.2 192 44.8
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 6.9e-22 108.2 197 40.1
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.0e-21 106.7 179 43.0
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.3e-20 104.0 182 40.1
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.3e-20 104.0 178 42.7
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 6.4e-20 101.7 179 43.6
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 8.4e-20 101.3 191 41.4
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.4e-19 100.5 191 40.8
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 4.2e-19 99.0 180 41.1
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 9.3e-19 97.8 188 41.0
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 2.1e-18 96.7 189 41.3
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 1.3e-17 94.0 188 38.8
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 2.3e-17 93.2 187 40.6
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 2.3e-17 93.2 187 40.6
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 2.3e-17 93.2 178 39.3
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 6.7e-17 91.7 199 41.2
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 1.1e-16 90.9 198 39.4
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 1.5e-16 90.5 190 37.9
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 1.5e-16 90.5 188 41.0
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 1.5e-16 90.5 153 47.1
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.9e-16 90.1 187 39.6
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 2.5e-16 89.7 197 37.1
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 3.3e-16 89.4 188 40.4
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 5.6e-16 88.6 185 38.9
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 7.4e-16 88.2 188 40.4
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 9.6e-16 87.8 198 39.4
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 9.6e-16 87.8 193 36.3
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 1.3e-15 87.4 187 40.6
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 1.6e-15 87.0 185 36.2
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 1.6e-15 87.0 185 36.2
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.1e-15 86.7 72 61.1
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 2.1e-15 86.7 183 38.3
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 2.8e-15 86.3 185 36.8
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 2.8e-15 86.3 185 36.8
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 2.8e-15 86.3 187 40.6
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 3.7e-15 85.9 192 38.0
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 3.7e-15 85.9 153 41.2
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 4.8e-15 85.5 198 38.9
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 4.8e-15 85.5 198 38.9
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 6.2e-15 85.1 139 40.3
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 6.2e-15 85.1 198 38.9
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 6.2e-15 85.1 198 38.9
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 6.2e-15 85.1 190 37.9
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 6.2e-15 85.1 177 36.7
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 1.4e-14 84.0 185 36.8
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 2.4e-14 83.2 187 36.4
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 2.4e-14 83.2 187 36.4
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 2.4e-14 83.2 187 36.4
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 3.1e-14 82.8 184 37.0
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 3.1e-14 82.8 184 37.0
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 4.0e-14 82.4 189 39.7
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 4.0e-14 82.4 191 36.1
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 5.3e-14 82.0 158 38.6
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 5.3e-14 82.0 189 39.7
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 5.3e-14 82.0 177 35.0
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 6.9e-14 81.6 184 38.6
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 9.0e-14 81.3 141 41.8
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 9.0e-14 81.3 187 39.0
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 9.0e-14 81.3 166 38.6
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 2.0e-13 80.1 198 38.9
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 2.0e-13 80.1 187 36.4
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 2.6e-13 79.7 79 55.7
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 2.6e-13 79.7 123 42.3
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 3.4e-13 79.3 137 40.9
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 4.5e-13 79.0 185 35.1
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 4.5e-13 79.0 192 37.5
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 5.8e-13 78.6 159 39.0
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 7.6e-13 78.2 188 37.8
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 1.7e-12 77.0 189 35.4
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.2e-12 76.6 138 39.1
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 2.2e-12 76.6 78 55.1
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 2.9e-12 76.3 76 55.3
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 2.9e-12 76.3 77 57.1
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 3.8e-12 75.9 167 37.1
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 4.9e-12 75.5 190 35.8
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 6.5e-12 75.1 145 40.7
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 8.4e-12 74.7 158 38.0
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 8.4e-12 74.7 164 37.2
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 1.4e-11 73.9 81 54.3
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 1.4e-11 73.9 74 55.4
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 1.4e-11 73.9 189 40.2
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 1.9e-11 73.6 156 38.5
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 1.9e-11 73.6 156 38.5
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 5.5e-11 72.0 186 36.0
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 5.5e-11 72.0 187 36.9
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 7.1e-11 71.6 146 37.0
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 7.1e-11 71.6 157 37.6
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 9.3e-11 71.2 156 37.8
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 9.3e-11 71.2 156 37.8
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 9.3e-11 71.2 80 50.0
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 1.6e-10 70.5 184 34.8
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.6e-10 70.5 193 34.2
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 2.1e-10 70.1 197 37.6
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 2.7e-10 69.7 192 35.4
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 2.7e-10 69.7 189 33.3
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 2.7e-10 69.7 140 36.4
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 3.5e-10 69.3 164 37.2
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 7.9e-10 68.2 73 50.7
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 7.9e-10 68.2 187 36.4
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 1.3e-09 67.4 199 33.2
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.9e-09 65.9 167 34.1
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.9e-08 63.5 79 50.6
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 2.5e-08 63.2 185 32.4
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 9.7e-08 61.2 184 34.8
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.3e-07 60.8 179 31.3
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 5.3e-06 55.5 139 38.1
HanXRQChr17g0545191 Helianthus annuus HOM05D005097 ORTHO05D006186 9.0e-06 54.7 76 46.1


User provided reference genes

Program Settings