Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 1.6e-274 948.7 469 100.0
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 3.8e-239 831.2 468 87.0
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 3.2e-238 828.2 468 86.1
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 1.2e-235 819.7 467 86.5
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 2.6e-219 765.4 467 79.9
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 2.8e-218 761.9 466 79.0
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 2.8e-205 718.8 468 75.2
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 5.2e-204 714.5 468 74.4
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.7e-202 709.5 468 73.9
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 2.9e-194 682.2 474 71.9
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 1.6e-192 676.4 442 75.3
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 7.8e-192 674.1 468 69.7
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 1.7e-191 672.9 468 71.6
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.3e-191 672.5 466 69.7
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 3.9e-191 671.8 468 70.1
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.1e-190 670.2 468 68.4
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 3.3e-190 668.7 468 69.7
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 1.2e-189 666.8 468 69.9
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.1e-188 663.7 463 69.1
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 6.8e-188 661.0 466 69.5
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 7.6e-187 657.5 466 68.5
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 7.6e-187 657.5 469 68.0
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 4.9e-186 654.8 466 68.5
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 4.9e-186 654.8 464 67.5
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.4e-186 654.4 468 67.7
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.4e-186 654.4 466 68.5
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 8.4e-186 654.1 468 68.2
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.9e-185 652.9 466 68.2
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 2.4e-185 652.5 463 67.0
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 6.0e-184 647.9 469 66.7
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.3e-183 646.7 468 67.7
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 5.1e-183 644.8 468 67.5
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 8.7e-183 644.0 455 68.6
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.5e-182 643.3 472 67.4
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.6e-181 639.8 469 65.0
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 1.2e-179 633.6 464 65.7
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.5e-179 633.3 468 64.7
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.9e-177 626.3 468 65.0
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.2e-177 625.5 441 69.2
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 3.5e-176 622.1 468 64.3
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 6.0e-176 621.3 468 65.4
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 1.3e-175 620.2 468 66.9
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 3.0e-175 619.0 468 65.4
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 5.1e-175 618.2 464 65.7
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 5.1e-175 618.2 463 65.0
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 1.1e-174 617.1 463 64.6
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 3.3e-174 615.5 468 63.7
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 3.3e-174 615.5 489 62.8
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 7.3e-174 614.4 468 63.7
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.6e-173 613.2 468 65.2
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 4.8e-173 611.7 466 64.4
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 6.9e-172 607.8 468 65.2
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 4.9e-170 601.7 467 60.8
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.1e-169 600.5 470 63.0
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.4e-169 600.1 420 69.8
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.6e-168 596.7 464 63.4
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 2.7e-168 595.9 464 62.5
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 7.9e-168 594.3 469 61.0
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.3e-167 593.6 469 61.4
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 3.9e-167 592.0 474 61.2
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 5.1e-167 591.7 469 60.8
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.3e-166 589.0 469 61.8
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 5.6e-166 588.2 467 61.9
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 5.6e-166 588.2 442 66.1
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.3e-165 587.0 494 62.1
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 3.1e-164 582.4 471 61.6
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.2e-163 580.5 458 60.7
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 1.5e-163 580.1 470 59.4
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 7.6e-163 577.8 468 60.5
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 2.9e-162 575.9 471 61.1
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 3.8e-162 575.5 463 62.0
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 8.4e-162 574.3 471 61.1
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 8.4e-162 574.3 470 59.4
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.1e-161 573.9 467 59.3
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.4e-161 573.5 458 60.3
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.9e-161 573.2 471 60.9
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 2.5e-161 572.8 470 59.4
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 4.2e-161 572.0 471 60.7
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 4.2e-161 572.0 471 60.7
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 7.1e-161 571.2 473 60.9
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 7.1e-161 571.2 417 66.7
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 2.7e-160 569.3 471 60.3
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-159 567.0 458 59.2
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.3e-159 567.0 443 63.4
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 6.7e-159 564.7 458 59.8
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 8.7e-159 564.3 458 58.7
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 3.3e-158 562.4 458 58.1
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-157 560.5 458 58.1
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 4.8e-157 558.5 458 59.4
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 6.2e-157 558.1 440 61.6
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 6.2e-157 558.1 467 59.5
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 5.3e-156 555.1 439 61.0
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 4.5e-155 552.0 458 59.0
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 2.2e-154 549.7 468 59.8
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 4.9e-154 548.5 437 61.3
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-151 540.4 434 59.0
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 2.3e-151 539.7 469 57.8
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 4.3e-150 535.4 463 56.6
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 2.8e-149 532.7 430 58.8
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 3.7e-149 532.3 461 58.4
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 6.3e-149 531.6 470 56.4
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 8.2e-149 531.2 449 57.0
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.2e-147 527.3 467 53.5
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 5.9e-147 525.0 441 57.8
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 3.8e-146 522.3 483 54.7
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 4.2e-145 518.8 470 56.4
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 5.5e-145 518.5 490 57.8
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 6.1e-144 515.0 465 55.9
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 2.2e-141 506.5 448 56.2
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 4.8e-141 505.4 421 59.4
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 5.0e-138 495.4 472 50.8
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.4e-137 493.8 343 70.3
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-136 490.7 389 60.2
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 2.1e-136 490.0 469 56.3
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 7.9e-136 488.0 470 53.6
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 9.7e-134 481.1 360 63.3
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 2.9e-130 469.5 364 60.4
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 1.0e-122 444.5 431 52.7
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 5.0e-122 442.2 448 52.5
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 2.3e-119 433.3 512 48.4
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 3.1e-108 396.4 505 44.6
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 2.8e-96 356.7 461 43.2
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 2.0e-86 323.9 265 59.2
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 8.6e-82 308.5 428 40.2
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 3.6e-80 303.1 233 67.4
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 1.1e-79 301.6 405 41.7
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.2e-72 275.8 197 67.5
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 1.1e-71 275.0 148 85.8
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.4e-71 274.6 190 66.8
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 1.1e-68 265.0 201 68.7
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 1.4e-68 264.6 201 68.2
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 3.3e-65 253.4 227 58.1
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 7.9e-51 205.7 317 42.0
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 6.7e-50 202.6 222 47.7
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 1.9e-49 201.1 377 37.7
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 3.1e-47 193.7 219 46.6
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 2.5e-41 174.1 273 38.1
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 9.0e-39 165.6 110 67.3
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 8.2e-32 142.5 84 81.0
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 1.4e-31 141.7 193 40.4
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 6.9e-31 139.4 178 43.8
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 6.5e-29 132.9 116 59.5
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 3.2e-28 130.6 213 39.9
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 3.6e-27 127.1 132 50.8
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.7e-25 119.8 109 56.0
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 5.7e-25 119.8 213 39.0
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-23 114.8 146 46.6
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-22 112.1 123 49.6
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 2.0e-22 111.3 103 54.4
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 2.6e-22 110.9 76 61.8
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 3.4e-22 110.5 146 45.2
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 5.9e-22 109.8 76 61.8
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 1.3e-21 108.6 90 62.2
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 2.2e-21 107.8 120 50.0
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 3.8e-21 107.1 97 60.8
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 2.7e-19 100.9 93 59.1
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 3.6e-19 100.5 217 37.3
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 1.4e-18 98.6 56 78.6
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.3e-18 97.8 57 66.7
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 5.1e-18 96.7 64 62.5
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 6.7e-18 96.3 85 55.3
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.6e-14 84.3 56 64.3
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 1.9e-12 78.2 111 41.4
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.6e-11 75.1 177 30.5
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 3.6e-11 73.9 53 62.3
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 3.0e-10 70.9 53 56.6
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 3.0e-10 70.9 170 28.8
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 4.0e-10 70.5 177 29.4
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 5.2e-10 70.1 177 29.4
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 4.1e-07 60.5 40 62.5
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 7.0e-07 59.7 47 55.3
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.5e-06 57.4 76 39.5
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.5e-06 57.4 76 39.5
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 7.7e-06 56.2 56 53.6
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.7e-06 56.2 76 39.5


User provided reference genes

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