Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.4e-259 899.0 454 100.0
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 2.9e-228 795.0 454 89.9
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 4.3e-203 711.4 452 81.2
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 1.6e-202 709.5 414 86.2
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 8.1e-202 707.2 431 83.1
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 3.1e-193 678.7 446 77.8
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 2.7e-181 639.0 453 73.3
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 4.5e-176 621.7 406 75.4
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 4.5e-176 621.7 456 70.0
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 3.8e-175 618.6 406 74.9
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 4.0e-169 598.6 414 73.7
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 2.7e-165 585.9 358 81.0
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 4.6e-165 585.1 446 67.7
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 4.3e-155 552.0 402 67.7
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 2.2e-154 549.7 458 62.9
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 1.4e-153 547.0 355 73.2
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 9.0e-153 544.3 415 64.3
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 3.4e-152 542.3 414 65.5
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 3.4e-152 542.3 419 66.3
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 5.9e-152 541.6 415 65.1
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 1.7e-151 540.0 431 64.0
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 1.7e-151 540.0 415 65.1
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 2.2e-151 539.7 464 61.0
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 5.0e-151 538.5 414 65.2
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 8.5e-151 537.7 395 67.3
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.4e-150 537.0 415 64.8
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 1.4e-150 537.0 395 66.6
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.7e-149 532.7 423 63.4
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 3.6e-149 532.3 400 67.0
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 6.1e-149 531.6 399 66.7
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 6.1e-149 531.6 395 65.6
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 6.1e-149 531.6 395 65.8
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 7.9e-149 531.2 388 66.2
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 1.8e-148 530.0 400 66.8
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 3.9e-148 528.9 395 65.6
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 5.1e-148 528.5 418 62.2
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 6.7e-148 528.1 398 65.6
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 1.1e-147 527.3 414 65.0
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 2.5e-147 526.2 388 65.7
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 1.3e-146 523.9 431 61.7
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.7e-146 523.5 393 65.6
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 3.7e-146 522.3 355 69.9
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 6.3e-146 521.5 396 65.2
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 8.2e-146 521.2 437 62.0
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 1.8e-145 520.0 413 63.4
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 4.1e-145 518.8 468 58.1
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.0e-144 516.5 411 63.3
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 5.9e-144 515.0 392 64.8
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 1.0e-143 514.2 395 65.6
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 1.3e-143 513.8 417 64.3
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 5.0e-143 511.9 424 61.8
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.1e-142 510.8 461 57.7
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 5.5e-142 508.4 395 64.6
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 1.2e-141 507.3 421 61.8
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 2.1e-141 506.5 437 59.3
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.1e-141 506.5 359 68.2
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 4.7e-141 505.4 411 62.8
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 4.7e-141 505.4 358 66.5
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 1.4e-140 503.8 397 63.7
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 1.1e-139 500.7 398 63.8
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.0e-139 500.0 400 62.8
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 3.3e-139 499.2 340 70.3
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 3.3e-139 499.2 339 70.2
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 2.2e-138 496.5 340 68.2
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 2.8e-138 496.1 355 67.0
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 6.3e-138 495.0 355 67.0
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 8.2e-138 494.6 372 65.6
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 1.8e-137 493.4 415 61.0
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 3.1e-137 492.7 413 60.3
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 5.3e-137 491.9 424 59.0
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 5.3e-137 491.9 355 66.8
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 6.9e-137 491.5 417 59.5
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 1.2e-136 490.7 368 67.1
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 2.0e-136 490.0 360 66.4
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 1.0e-135 487.6 412 62.1
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 1.3e-135 487.3 368 66.3
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 8.5e-135 484.6 438 57.8
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 7.2e-134 481.5 370 62.2
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 1.6e-133 480.3 321 72.0
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 1.6e-133 480.3 348 66.7
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 2.1e-133 479.9 414 60.1
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 8.0e-133 478.0 415 59.3
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 1.5e-131 473.8 458 54.8
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 4.4e-131 472.2 356 63.2
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.7e-130 470.3 355 63.9
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 1.4e-129 467.2 392 61.7
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 4.1e-129 465.7 441 56.0
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 4.1e-129 465.7 441 56.0
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 3.6e-125 452.6 403 58.1
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 3.6e-125 452.6 420 54.5
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 5.2e-124 448.7 403 57.8
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 5.7e-123 445.3 433 54.3
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 1.3e-122 444.1 471 53.9
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 1.7e-122 443.7 360 60.3
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 2.8e-122 443.0 382 57.6
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.8e-122 443.0 461 53.1
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 6.3e-122 441.8 416 55.5
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 3.1e-121 439.5 355 59.7
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 1.6e-120 437.2 360 59.4
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 4.5e-120 435.6 420 55.7
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 1.3e-119 434.1 361 59.3
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 1.3e-119 434.1 360 58.9
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 1.1e-118 431.0 360 58.9
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 1.1e-118 431.0 360 58.6
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 1.1e-118 431.0 360 58.6
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 2.5e-118 429.9 355 59.2
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.2e-118 429.5 396 57.6
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 4.2e-118 429.1 419 56.3
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 5.5e-118 428.7 361 57.9
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 3.6e-117 426.0 355 58.3
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 6.1e-117 425.2 446 54.0
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 1.0e-116 424.5 425 50.4
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 1.8e-116 423.7 362 59.1
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 1.7e-114 417.2 468 49.8
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 2.8e-114 416.4 439 49.2
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 4.8e-114 415.6 361 57.3
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 6.3e-114 415.2 381 58.5
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 1.3e-111 407.5 432 47.2
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 4.2e-110 402.5 291 66.0
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 2.1e-109 400.2 292 67.1
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 2.3e-108 396.7 290 66.6
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 8.9e-108 394.8 344 59.6
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.3e-106 391.0 421 50.6
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 1.1e-105 387.9 321 57.9
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 7.0e-97 358.6 418 48.1
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 2.0e-96 357.1 291 60.8
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.6e-93 347.4 293 58.0
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.3e-87 327.8 291 58.1
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 5.1e-87 325.9 451 42.6
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 6.8e-84 315.5 469 39.7
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 1.2e-80 304.7 295 51.9
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 7.8e-80 302.0 371 44.2
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.1e-76 291.6 417 45.1
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 5.6e-70 269.2 181 65.2
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 9.6e-70 268.5 129 97.7
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 9.0e-68 261.9 341 44.6
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 9.3e-57 225.3 320 42.5
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 2.1e-56 224.2 371 38.5
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 2.1e-56 224.2 371 38.5
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.9e-56 222.2 228 53.9
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 2.3e-55 220.7 301 41.5
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 5.3e-52 209.5 180 61.1
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 3.2e-49 200.3 455 33.4
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.9e-44 182.6 230 46.1
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 9.0e-44 182.2 368 35.3
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.7e-35 152.5 119 60.5
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 3.2e-25 120.6 371 26.1
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 6.7e-23 112.8 379 23.2
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.3e-21 108.6 191 38.7
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 5.9e-19 99.8 104 50.0
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 1.3e-18 98.6 75 68.0
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 3.8e-18 97.1 91 59.3
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 9.4e-17 92.4 53 81.1
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 1.4e-15 88.6 240 26.2
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 3.7e-13 80.5 83 49.4
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 3.7e-13 80.5 83 49.4
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 5.5e-09 66.6 41 78.0
arahy.Tifrunner.gnm1.ann1.FTJQ4M Arachis hypogaea HOM05D004497 ORTHO05D005539 1.2e-08 65.5 55 58.2
ECA248G2349 Erigeron canadensis HOM05D000041 ORTHO05D000452 3.4e-06 57.4 50 54.0
Glyma.02G139950 Glycine max HOM05D002163 ORTHO05D002386 3.4e-06 57.4 29 86.2


User provided reference genes

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