Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 8.8e-137 490.7 338 100.0
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 2.6e-104 382.9 338 78.4
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 2.7e-93 346.3 337 69.1
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 1.7e-92 343.6 337 74.2
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 5.1e-92 342.0 336 68.5
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 9.6e-91 337.8 338 72.5
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 4.7e-90 335.5 335 71.9
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 1.4e-89 334.0 338 77.2
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 1.1e-86 324.3 339 69.3
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 4.2e-86 322.4 337 63.2
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.0e-76 291.2 415 56.6
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.3e-71 274.2 332 63.6
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 2.2e-71 273.5 339 63.1
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.9e-70 270.4 338 63.3
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 5.5e-70 268.9 354 60.5
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 5.5e-70 268.9 298 66.8
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 7.1e-70 268.5 344 60.2
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 7.1e-70 268.5 344 60.2
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 9.3e-70 268.1 342 62.0
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.2e-69 267.7 335 62.7
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.6e-69 267.3 335 63.0
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.7e-69 266.5 336 62.5
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 2.7e-69 266.5 341 61.6
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 4.6e-69 265.8 340 61.8
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 6.0e-69 265.4 335 62.7
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 7.9e-69 265.0 338 62.1
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 7.9e-69 265.0 346 60.4
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 7.9e-69 265.0 352 59.9
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 1.3e-68 264.2 343 60.9
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 1.8e-68 263.8 338 60.7
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 5.1e-68 262.3 339 60.5
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 5.1e-68 262.3 335 61.8
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.1e-67 261.2 355 59.4
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.9e-67 260.4 353 59.2
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 3.3e-67 259.6 337 61.1
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 7.4e-67 258.5 298 65.8
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 9.6e-67 258.1 334 60.8
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.1e-66 256.9 345 58.3
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 2.1e-66 256.9 334 60.5
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 2.8e-66 256.5 337 60.5
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 8.2e-66 255.0 342 59.9
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.1e-65 254.6 364 57.1
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.4e-65 254.2 348 58.6
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.4e-65 254.2 340 60.0
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 3.1e-65 253.1 292 66.1
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 3.1e-65 253.1 339 59.6
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.0e-65 252.7 337 60.5
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 4.0e-65 252.7 337 60.5
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 6.9e-65 251.9 349 57.9
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 9.0e-65 251.5 351 51.9
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.2e-64 251.1 291 63.9
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 3.4e-64 249.6 308 61.4
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 4.5e-64 249.2 332 59.6
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.8e-64 248.8 337 59.3
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 5.8e-64 248.8 152 85.5
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 7.6e-64 248.4 340 58.8
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.3e-63 247.7 340 60.0
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.7e-63 247.3 342 58.5
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.2e-63 246.9 334 59.0
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 2.2e-63 246.9 333 59.5
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.9e-63 246.5 280 66.8
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 6.5e-63 245.4 339 57.8
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 8.4e-63 245.0 337 58.8
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 3.2e-62 243.0 337 59.9
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 4.2e-62 242.7 341 57.2
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.2e-61 241.1 325 60.0
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.2e-61 241.1 294 63.6
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 1.6e-61 240.7 339 57.5
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.1e-61 240.4 332 58.1
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 2.7e-61 240.0 341 56.9
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 3.5e-61 239.6 295 61.0
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 6.0e-61 238.8 391 39.1
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 7.9e-61 238.4 354 55.6
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 1.3e-60 237.7 341 56.9
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 8.7e-60 235.0 355 55.5
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 8.7e-60 235.0 335 54.6
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.1e-59 234.6 345 57.1
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 1.5e-59 234.2 294 60.9
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.9e-59 233.8 338 56.5
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 3.3e-59 233.0 342 58.2
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.7e-59 232.3 293 63.1
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.6e-58 230.7 352 55.4
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.6e-58 230.7 354 54.8
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 2.8e-58 229.9 283 62.5
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 6.3e-58 228.8 336 56.5
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 8.2e-58 228.4 338 57.7
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.1e-57 228.0 356 55.1
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.8e-57 227.3 296 62.2
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.4e-54 217.6 341 56.0
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 5.5e-54 215.7 332 55.7
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 3.6e-53 213.0 233 49.8
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 7.9e-53 211.8 337 54.3
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.0e-52 211.5 344 51.2
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 1.8e-52 210.7 337 55.2
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 5.1e-52 209.1 301 60.5
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.7e-52 208.8 337 60.5
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 9.7e-51 204.9 337 57.3
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 9.7e-51 204.9 217 53.0
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.1e-49 199.9 337 53.4
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 1.5e-48 197.6 213 53.1
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.5e-48 196.1 245 46.5
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 7.7e-48 195.3 171 59.6
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.8e-47 193.0 364 34.9
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 3.8e-47 193.0 357 50.1
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 1.1e-46 191.4 286 56.3
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 5.5e-46 189.1 305 56.4
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 2.1e-45 187.2 298 57.7
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 3.6e-45 186.4 160 58.1
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 1.8e-44 184.1 296 56.4
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 2.3e-44 183.7 317 36.3
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.3e-42 177.9 240 63.8
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 8.2e-42 175.3 165 52.7
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 5.2e-36 156.0 241 60.2
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 8.8e-36 155.2 279 53.4
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 8.5e-31 138.7 287 56.1
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 9.4e-30 135.2 267 51.7
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 1.6e-29 134.4 170 47.6
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 2.3e-28 130.6 164 76.8
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 2.0e-27 127.5 278 54.3
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 7.5e-27 125.6 164 73.2
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 6.3e-26 122.5 65 95.4
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.4e-25 121.3 214 36.9
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 1.8e-25 120.9 150 47.3
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 1.6e-24 117.9 85 69.4
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 1.5e-22 111.3 158 74.1
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.0e-21 105.5 142 78.9
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 2.0e-19 100.9 136 41.2
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.7e-18 96.7 176 36.4
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.1e-17 93.2 175 35.4
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.7e-16 90.5 175 35.4
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.9e-15 87.0 127 78.7
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 1.4e-12 78.2 133 57.1
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-12 78.2 122 79.5
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 6.8e-12 75.9 111 38.7
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 1.8e-09 67.8 37 86.5
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 4.1e-09 66.6 53 60.4
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 1.6e-08 64.7 56 57.1
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.6e-07 59.3 41 58.5


User provided reference genes

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