Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 0.0e+00 1100.5 560 100.0
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 3.0e-267 924.9 564 84.4
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 6.3e-257 890.6 560 82.5
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 3.5e-255 884.8 564 81.7
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 8.0e-244 847.0 570 76.8
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 2.3e-243 845.5 548 79.4
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 3.4e-242 841.6 571 76.7
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 4.4e-242 841.3 544 80.0
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 1.1e-235 820.1 567 75.5
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 2.3e-235 818.9 573 75.0
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 2.2e-233 812.4 561 74.5
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 2.9e-233 812.0 512 79.9
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 3.0e-230 802.0 516 78.3
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 3.0e-230 802.0 516 78.3
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 1.9e-229 799.3 512 77.3
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 1.3e-225 786.6 544 73.7
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 2.9e-225 785.4 492 79.7
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 3.8e-225 785.0 490 78.8
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 6.4e-225 784.3 539 73.5
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 5.4e-224 781.2 556 72.1
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 7.1e-224 780.8 544 73.2
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 9.2e-224 780.4 537 73.7
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 2.1e-223 779.2 518 76.4
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 1.0e-222 776.9 492 78.7
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 1.3e-222 776.5 495 78.0
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.3e-222 776.5 551 72.8
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 6.6e-222 774.2 536 73.9
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 8.6e-222 773.9 552 72.5
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 8.6e-222 773.9 537 73.9
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 8.6e-222 773.9 564 70.7
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 1.5e-221 773.1 502 77.1
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 1.5e-221 773.1 562 72.1
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 3.3e-221 771.9 555 71.5
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 5.6e-221 771.2 565 70.6
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 7.3e-221 770.8 533 73.4
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 9.6e-221 770.4 565 70.4
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 1.2e-220 770.0 547 71.7
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 8.1e-220 767.3 489 76.9
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 1.1e-219 766.9 507 76.3
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 2.4e-219 765.8 491 78.0
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 3.1e-219 765.4 508 76.0
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 5.2e-219 764.6 501 76.2
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 5.2e-219 764.6 567 70.0
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 6.9e-219 764.2 489 76.7
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 6.9e-219 764.2 506 75.3
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 1.5e-218 763.1 486 78.0
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 9.9e-218 760.4 489 75.7
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 1.7e-217 759.6 489 78.1
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 1.7e-217 759.6 490 76.9
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 1.1e-216 756.9 511 75.0
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 2.4e-216 755.7 565 69.4
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 2.4e-216 755.7 558 70.8
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 4.2e-216 755.0 555 71.0
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 9.3e-216 753.8 573 68.4
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 9.3e-216 753.8 573 69.1
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.2e-215 753.4 558 70.4
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 2.1e-215 752.7 554 69.9
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 7.8e-215 750.7 544 70.8
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 1.3e-214 750.0 502 75.1
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 3.0e-214 748.8 489 77.1
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 1.6e-212 743.0 497 75.1
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 2.1e-212 742.7 472 76.3
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 3.6e-212 741.9 505 73.3
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 4.8e-212 741.5 502 74.5
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 1.8e-211 739.6 505 73.1
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 3.1e-211 738.8 490 75.1
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 2.0e-210 736.1 479 76.6
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 7.6e-210 734.2 491 73.7
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 7.6e-210 734.2 555 67.4
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 9.9e-210 733.8 490 74.1
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 1.3e-209 733.4 479 76.2
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 1.3e-209 733.4 489 74.6
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 3.8e-209 731.9 499 72.7
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 4.9e-209 731.5 477 76.3
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 4.9e-209 731.5 477 76.1
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 1.4e-208 729.9 477 76.1
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 7.9e-207 724.2 536 68.5
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 1.3e-206 723.4 539 67.7
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 5.1e-206 721.5 536 68.3
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 5.1e-206 721.5 541 66.5
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 7.4e-205 717.6 547 66.7
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 3.7e-204 715.3 503 73.8
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 3.7e-204 715.3 506 71.3
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 4.8e-204 714.9 484 73.8
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 6.2e-204 714.5 501 71.9
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 8.1e-204 714.1 496 71.8
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.1e-203 713.8 501 71.7
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 5.3e-203 711.4 439 80.2
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 5.3e-203 711.4 507 70.4
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 9.0e-203 710.7 536 67.7
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 6.4e-201 704.5 550 65.1
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 1.1e-200 703.7 543 66.1
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 2.5e-197 692.6 543 65.2
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 5.6e-197 691.4 468 72.4
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 7.4e-197 691.0 443 77.7
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.0e-193 680.6 448 76.1
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 4.9e-193 678.3 502 70.1
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.1e-192 677.2 411 80.3
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 4.2e-192 675.2 503 66.0
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 1.3e-185 653.7 486 63.8
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 7.9e-183 644.4 484 64.7
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 8.7e-182 641.0 484 64.9
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.3e-181 639.0 484 64.7
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 9.7e-181 637.5 543 63.2
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 2.9e-177 625.9 488 65.2
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 6.1e-175 618.2 448 71.0
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 3.9e-174 615.5 465 64.3
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 6.7e-174 614.8 478 68.2
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 2.0e-173 613.2 474 62.4
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 4.4e-173 612.1 477 62.3
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 1.4e-168 597.0 498 60.8
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 4.7e-167 592.0 391 75.4
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 8.0e-159 564.7 480 55.8
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.4e-158 563.9 482 57.1
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.3e-156 557.4 477 56.4
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 1.1e-152 544.3 483 56.3
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 2.3e-142 510.0 434 62.7
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 3.1e-139 499.6 485 50.5
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.0e-134 484.6 383 66.8
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 9.8e-133 478.0 318 75.5
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 5.0e-129 465.7 328 71.3
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 5.8e-125 452.2 492 47.8
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 1.4e-118 431.0 493 46.0
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 1.2e-66 258.5 215 61.4
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 1.5e-61 241.5 482 31.1
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 2.2e-55 221.1 143 72.7
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 2.6e-40 171.0 426 27.2
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 2.4e-38 164.5 102 76.5
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 5.9e-29 133.3 70 87.1
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.0e-24 118.2 80 78.8
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 5.4e-14 83.6 51 76.5
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 1.2e-13 82.4 488 23.2
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 6.6e-12 76.6 433 26.3
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 4.1e-06 57.4 28 89.3


User provided reference genes

Program Settings