Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04555_v3 Cicer arietinum L. HOM05D011393 ORTHO05D013493 2.3e-71 272.3 160 100.0
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 4.9e-45 184.9 164 76.8
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 1.2e-38 163.7 164 64.6
Medtr5g032760 Medicago truncatula HOM05D011393 ORTHO05D013493 5.4e-36 154.8 165 62.4
Phvul.007G239300 Phaseolus vulgaris HOM05D011393 ORTHO05D013493 9.6e-33 144.1 153 62.1
Glyma.10G109400 Glycine max HOM05D011393 ORTHO05D013493 5.3e-31 138.3 165 55.2
TPR.G38738 Trifolium pratense HOM05D011393 ORTHO05D013493 3.4e-30 135.6 164 57.9
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 1.3e-29 133.7 166 56.0
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 2.4e-28 129.4 155 55.5
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 4.8e-24 115.2 154 52.6
VMungo0720G0803 Vigna mungo HOM05D011393 ORTHO05D013493 3.0e-18 95.9 89 68.5
Lj6g0004790 Lotus japonicus HOM05D011393 ORTHO05D013493 1.9e-17 93.2 150 49.3
Lj5g0013981 Lotus japonicus HOM05D011393 ORTHO05D013493 5.3e-15 85.1 113 46.0
Medtr2g097650 Medicago truncatula HOM05D011393 ORTHO05D013493 4.6e-11 72.0 67 73.1
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 8.7e-10 67.8 128 44.5
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 4.3e-09 65.5 106 49.1
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 2.8e-08 62.8 150 40.7
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 3.7e-08 62.4 106 47.2
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 8.2e-08 61.2 153 36.6
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 1.4e-07 60.5 83 47.0
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.4e-07 60.5 164 37.2
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.8e-07 60.1 83 47.0
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.8e-07 60.1 91 44.0
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 2.4e-07 59.7 154 40.3
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.4e-07 59.7 160 40.0
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 4.1e-07 58.9 171 35.7
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 4.1e-07 58.9 129 47.3
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 4.1e-07 58.9 108 50.0
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 5.3e-07 58.5 156 40.4
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.3e-07 58.5 164 37.2
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 6.9e-07 58.2 125 44.0
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 6.9e-07 58.2 139 42.4
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 6.9e-07 58.2 165 41.8
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 9.0e-07 57.8 97 48.5
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 9.0e-07 57.8 97 48.5
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 9.0e-07 57.8 115 39.1
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.2e-06 57.4 129 47.3
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 1.2e-06 57.4 164 37.2
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.5e-06 57.0 158 40.5
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.5e-06 57.0 93 43.0
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 2.0e-06 56.6 100 50.0
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 2.6e-06 56.2 76 46.1
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 2.6e-06 56.2 166 37.3
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 3.4e-06 55.8 136 42.6
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 3.4e-06 55.8 116 34.5
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 4.5e-06 55.5 112 45.5
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 5.9e-06 55.1 125 38.4
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.9e-06 55.1 164 36.6
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 7.7e-06 54.7 181 37.0
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 7.7e-06 54.7 162 40.7
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 7.7e-06 54.7 102 51.0
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.0e-05 54.3 130 42.3
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.0e-05 54.3 93 41.9
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.0e-05 54.3 93 41.9
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.0e-05 54.3 93 41.9
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.0e-05 54.3 127 41.7
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 1.0e-05 54.3 62 54.8


User provided reference genes

Program Settings