Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 4.0e-176 621.3 313 100.0
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 4.8e-153 544.7 313 87.5
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 1.3e-150 536.6 313 85.6
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 2.4e-149 532.3 313 87.9
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 1.5e-146 523.1 313 84.3
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 2.5e-138 495.7 309 79.9
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 6.3e-129 464.5 312 73.4
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 6.9e-128 461.1 276 84.1
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 1.7e-126 456.4 312 70.8
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 9.4e-125 450.7 310 72.3
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 4.7e-124 448.4 309 70.2
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 1.4e-123 446.8 312 70.5
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 1.5e-122 443.4 309 70.9
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 4.4e-122 441.8 272 79.8
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 7.4e-122 441.0 305 71.1
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 1.7e-121 439.9 311 68.8
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 4.8e-121 438.3 308 68.5
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 4.8e-121 438.3 312 69.6
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 4.8e-121 438.3 309 70.9
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 6.3e-121 438.0 309 69.9
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 6.3e-121 438.0 323 73.1
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 4.1e-120 435.3 311 70.1
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 2.6e-119 432.6 314 69.4
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 2.6e-119 432.6 308 68.2
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 3.4e-119 432.2 311 70.1
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 5.9e-119 431.4 309 68.0
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.7e-118 429.9 308 68.8
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 2.2e-118 429.5 310 71.0
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 3.8e-118 428.7 311 67.8
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.4e-117 426.8 305 69.8
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 1.4e-117 426.8 310 68.4
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 1.9e-117 426.4 309 69.6
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 4.2e-117 425.2 310 70.0
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 5.5e-117 424.9 309 69.3
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 7.2e-117 424.5 309 69.9
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.2e-117 424.5 311 67.8
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 7.2e-117 424.5 299 70.2
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 9.4e-117 424.1 310 69.7
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 9.4e-117 424.1 310 69.7
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 1.6e-116 423.3 305 68.5
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.1e-116 422.9 311 67.5
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 2.1e-116 422.9 310 69.4
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 2.1e-116 422.9 311 66.2
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 6.1e-116 421.4 309 66.0
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 8.0e-116 421.0 309 68.3
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.4e-115 420.2 308 65.6
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 1.8e-115 419.9 305 68.9
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.8e-115 419.9 305 69.8
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 2.3e-115 419.5 307 69.7
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 8.8e-115 417.5 308 65.9
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 1.1e-114 417.2 311 65.3
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 7.4e-114 414.5 310 65.2
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 9.7e-114 414.1 305 68.2
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 2.4e-112 409.5 317 63.7
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 5.3e-112 408.3 310 64.8
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 2.6e-111 406.0 311 64.3
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 3.5e-111 405.6 311 66.9
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 1.0e-110 404.1 353 60.3
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 1.0e-110 404.1 314 64.0
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 1.0e-110 404.1 313 64.2
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 5.0e-110 401.7 312 63.5
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 1.9e-109 399.8 309 63.8
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 1.9e-109 399.8 312 61.9
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 3.2e-109 399.1 313 62.3
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 3.2e-109 399.1 312 63.8
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 5.5e-109 398.3 312 62.8
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 5.5e-109 398.3 314 63.1
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 6.1e-108 394.8 314 62.4
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 1.4e-107 393.7 311 64.6
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 1.4e-107 393.7 314 62.7
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 3.0e-107 392.5 311 61.4
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 8.8e-107 391.0 313 62.3
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 8.8e-107 391.0 312 62.8
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 2.0e-106 389.8 305 65.6
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 2.8e-105 386.0 294 65.6
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 6.3e-105 384.8 315 62.2
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 1.1e-104 384.0 311 61.1
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 7.0e-104 381.3 303 62.0
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 1.3e-102 377.1 266 70.3
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 1.5e-101 373.6 309 60.8
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.2e-101 372.1 307 63.8
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.5e-101 371.7 307 63.8
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 2.7e-100 369.4 308 60.4
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 3.6e-100 369.0 307 63.5
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.6e-100 369.0 307 63.8
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-99 367.1 306 63.4
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-99 367.1 306 63.4
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.8e-99 366.7 304 64.5
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 3.0e-99 365.9 312 58.7
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.0e-99 365.5 307 62.9
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.0e-99 365.5 307 62.9
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 5.2e-99 365.2 307 63.2
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 2.2e-97 359.8 311 58.8
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 3.7e-97 359.0 308 58.4
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 6.3e-97 358.2 308 59.4
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.8e-96 356.7 309 58.3
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.1e-96 355.9 309 57.9
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.7e-95 351.3 303 62.0
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.9e-94 349.4 308 56.5
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 5.0e-94 348.6 310 56.1
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.5e-93 347.1 309 57.3
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.9e-93 346.7 309 58.9
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 7.2e-93 344.7 309 54.4
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 1.2e-92 344.0 353 50.4
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 3.6e-92 342.4 309 56.0
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 4.0e-91 339.0 308 55.5
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 8.9e-91 337.8 309 55.3
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.0e-90 336.7 240 65.0
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 3.4e-90 335.9 309 55.0
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.7e-87 326.2 251 62.9
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 4.5e-87 325.5 312 53.2
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.0e-86 324.3 312 53.2
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 5.0e-86 322.0 309 51.8
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 5.0e-86 322.0 309 51.8
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 9.5e-85 317.8 308 52.6
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 1.2e-84 317.4 310 51.6
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 1.2e-84 317.4 310 51.6
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 1.6e-84 317.0 311 51.4
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 2.1e-84 316.6 310 56.5
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 3.1e-83 312.8 312 51.9
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 7.5e-82 308.1 306 49.3
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 2.2e-81 306.6 307 49.8
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 2.9e-81 306.2 310 51.0
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 2.0e-79 300.1 308 48.4
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.6e-79 298.9 207 70.5
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 2.8e-76 289.7 183 72.7
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 4.7e-76 288.9 311 49.8
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 1.8e-75 287.0 322 46.0
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 4.1e-72 275.8 196 64.8
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 2.1e-71 273.5 260 53.8
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.3e-70 270.0 217 59.4
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 3.4e-66 256.1 171 70.8
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 2.3e-62 243.4 168 82.1
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 2.6e-50 203.4 150 60.0
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 5.4e-48 195.7 144 60.4
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 1.0e-46 191.4 209 51.2
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 2.5e-45 186.8 347 37.5
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 6.7e-38 162.2 162 59.9
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 2.0e-34 150.6 232 37.1
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 2.6e-26 123.6 91 76.9
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 9.3e-24 115.2 140 46.4
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 1.6e-23 114.4 279 30.1
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.3e-21 106.7 74 60.8
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 9.7e-21 105.1 262 29.4
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.8e-19 100.9 101 55.4
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 2.4e-19 100.5 229 28.8
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 1.2e-18 98.2 52 90.4
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.1e-16 91.7 72 58.3
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.2e-15 88.2 317 23.3
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 6.1e-15 85.9 88 59.1
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 1.5e-13 81.3 51 62.7
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.7e-09 67.8 49 59.2
Glyma.09G113200 Glycine max HOM05D004773 ORTHO05D005943 5.0e-09 66.2 52 51.9
Pp3c8_2710 Physcomitrium patens HOM05D004773 ORTHO05D005943 1.6e-07 61.2 94 30.9
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 2.1e-07 60.8 48 56.2


User provided reference genes

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