Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04476_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.8e-134 482.6 249 100.0
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 1.3e-47 194.1 203 58.1
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 7.1e-43 178.3 278 43.5
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 7.9e-42 174.9 229 52.0
Ca_03868_v3 Cicer arietinum L. HOM05D000047 ORTHO05D000044 3.0e-41 172.9 142 69.7
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 2.0e-37 160.2 237 44.3
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.4e-35 154.1 175 56.6
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 1.7e-31 140.6 207 44.9
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 2.0e-29 133.7 197 45.2
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 2.6e-29 133.3 188 46.3
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 4.5e-29 132.5 323 32.5
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 4.5e-29 132.5 323 32.5
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 3.8e-28 129.4 203 41.4
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 7.9e-26 121.7 191 41.4
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 2.3e-25 120.2 187 41.7
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 3.3e-24 116.3 218 38.1
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 7.4e-24 115.2 209 38.8
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 1.3e-23 114.4 216 37.5
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 2.8e-23 113.2 216 38.9
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.4e-22 110.9 210 36.7
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 2.4e-22 110.2 210 36.7
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 4.1e-22 109.4 192 40.1
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 9.1e-22 108.2 216 38.9
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.2e-21 107.8 210 36.2
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 1.2e-21 107.8 210 36.7
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 1.2e-21 107.8 211 37.4
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.6e-21 106.7 210 36.2
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 4.5e-21 105.9 210 36.2
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 1.3e-20 104.4 308 29.9
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 2.2e-20 103.6 184 38.6
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 6.5e-20 102.1 277 31.8
Ca_10866_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 6.5e-20 102.1 60 90.0
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 4.2e-19 99.4 210 35.2
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 5.5e-19 99.0 279 32.6
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 7.2e-19 98.6 269 30.1
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 1.6e-18 97.4 277 34.3
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 2.1e-18 97.1 112 50.0
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 3.6e-18 96.3 236 33.1
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 1.1e-16 91.3 211 34.1
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 7.4e-16 88.6 213 36.6
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 2.2e-15 87.0 209 34.9
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 4.8e-15 85.9 209 33.5
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 4.8e-15 85.9 211 34.1
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 6.3e-15 85.5 203 34.5
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 1.1e-14 84.7 181 34.8
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 1.4e-14 84.3 230 33.9
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.4e-14 84.3 199 34.2
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 3.1e-14 83.2 198 32.8
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 3.1e-14 83.2 193 34.2
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 7.0e-14 82.0 212 31.6
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 9.1e-14 81.6 213 32.4
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 2.0e-13 80.5 192 35.9
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 2.0e-13 80.5 202 34.7
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.6e-13 80.1 196 31.1
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 3.5e-13 79.7 190 35.8
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 1.3e-12 77.8 189 35.4
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 1.3e-12 77.8 189 35.4
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 1.3e-12 77.8 195 33.3
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 2.2e-12 77.0 173 31.2
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 2.9e-12 76.6 187 31.6
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 2.9e-12 76.6 190 34.7
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 3.8e-12 76.3 174 33.3
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 5.0e-12 75.9 205 30.7
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 5.0e-12 75.9 185 33.0
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 6.5e-12 75.5 169 34.3
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 8.5e-12 75.1 181 31.5
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 2.5e-11 73.6 177 33.9
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 4.2e-11 72.8 231 32.0
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 7.2e-11 72.0 204 29.9
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 7.2e-11 72.0 84 48.8
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 1.2e-10 71.2 164 31.7
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 2.1e-10 70.5 180 30.0
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.7e-10 70.1 98 39.8
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 2.7e-10 70.1 184 32.6
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 3.6e-10 69.7 176 34.1
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 3.6e-10 69.7 180 30.0
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 3.6e-10 69.7 187 31.6
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 4.7e-10 69.3 184 28.3
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 6.1e-10 68.9 102 41.2
Ca_04876_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 8.0e-10 68.6 34 97.1
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 8.0e-10 68.6 184 28.3
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 1.0e-09 68.2 182 35.2
Ca_28040_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 1.4e-09 67.8 35 91.4
TPR.G19931 Trifolium pratense HOM05D006796 ORTHO05D008615 1.8e-09 67.4 34 94.1
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 2.3e-09 67.0 199 32.7
Cfa008932 Carpinus fangiana HOM05D006796 ORTHO05D008615 2.3e-09 67.0 37 83.8
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 4.0e-09 66.2 237 27.8
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 4.0e-09 66.2 203 32.0
Haze_11961 Corylus avellana HOM05D006796 ORTHO05D008615 6.7e-09 65.5 64 57.8
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 8.8e-09 65.1 190 33.2
Medtr5g042520 Medicago truncatula HOM05D006796 ORTHO05D008615 8.8e-09 65.1 33 93.9
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 8.8e-09 65.1 164 32.9
QL03p069702 Quercus lobata HOM05D006796 ORTHO05D008615 8.8e-09 65.1 41 73.2
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.2e-08 64.7 102 40.2
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 1.5e-08 64.3 235 27.7
Psat2g126440 Pisum sativum HOM05D006796 ORTHO05D008615 1.5e-08 64.3 33 93.9
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 2.6e-08 63.5 237 27.0
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 2.6e-08 63.5 208 29.8
Hma1.2p1_0354F.1_g133820 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 3.3e-08 63.2 34 85.3
Hma1.2p1_0354F.1_g133830 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 3.3e-08 63.2 34 85.3
Lj2g0006920 Lotus japonicus HOM05D006796 ORTHO05D008615 5.7e-08 62.4 33 87.9
arahy.Tifrunner.gnm1.ann1.NP20FV Arachis hypogaea HOM05D006796 ORTHO05D008615 1.3e-07 61.2 38 76.3
arahy.Tifrunner.gnm1.ann1.R8NX8D Arachis hypogaea HOM05D006796 ORTHO05D008615 1.3e-07 61.2 38 76.3
Dinv34092 Davidia involucrata HOM05D006796 ORTHO05D008615 1.3e-07 61.2 34 85.3
GSVIVG01012496001 Vitis vinifera HOM05D006796 ORTHO05D008615 1.3e-07 61.2 34 82.4
Aa31LG1G1040 Aethionema arabicum HOM05D006796 ORTHO05D008615 1.7e-07 60.8 40 70.0
SalBow8G2627 Salvia bowleyana HOM05D006796 ORTHO05D008615 1.7e-07 60.8 34 85.3
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 2.2e-07 60.5 208 31.2
Glyma.01G052700 Glycine max HOM05D006796 ORTHO05D008615 2.8e-07 60.1 33 84.8
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 2.8e-07 60.1 185 30.3
Eucgr.B03198 Eucalyptus grandis HOM05D006796 ORTHO05D008615 3.7e-07 59.7 33 81.8
PGR102G1583 Punica granatum HOM05D006796 ORTHO05D008615 3.7e-07 59.7 34 82.4
THA.LOC104805179 Tarenaya hassleriana HOM05D006796 ORTHO05D008615 3.7e-07 59.7 38 73.7
Cpa.g.sc1.63 Carica papaya HOM05D006796 ORTHO05D008615 4.8e-07 59.3 34 82.4
Ciclev10032381m.g Citrus clementina HOM05D006796 ORTHO05D008615 4.8e-07 59.3 34 82.4
MELO3C002984.2 Cucumis melo HOM05D006796 ORTHO05D008615 4.8e-07 59.3 33 81.8
CsaV3_5G022970 Cucumis sativus L. HOM05D006796 ORTHO05D008615 4.8e-07 59.3 33 81.8
Oeu055099.3 Olea europaea HOM05D006796 ORTHO05D008615 4.8e-07 59.3 75 46.7
Phvul.002G103200 Phaseolus vulgaris HOM05D006796 ORTHO05D008615 4.8e-07 59.3 33 84.8
VMungo1215G0648 Vigna mungo HOM05D006796 ORTHO05D008615 4.8e-07 59.3 33 84.8
AUR62032832 Chenopodium quinoa HOM05D006796 ORTHO05D008615 6.3e-07 58.9 34 79.4
Manes.05G105900 Manihot esculenta HOM05D006796 ORTHO05D008615 6.3e-07 58.9 34 82.4
Oeu021077.1 Olea europaea HOM05D006796 ORTHO05D008615 6.3e-07 58.9 42 69.0
CiPaw.07G071700 Carya illinoinensis HOM05D006796 ORTHO05D008615 8.2e-07 58.5 59 57.6
TAR629G0550 Trochodendron aralioides HOM05D006796 ORTHO05D008615 8.2e-07 58.5 34 79.4
BolC5t29921H Brassica oleracea HOM05D006796 ORTHO05D008615 1.1e-06 58.2 35 74.3
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 1.1e-06 58.2 173 28.9
Atru.chr11.1722 Acer truncatum HOM05D006796 ORTHO05D008615 1.4e-06 57.8 67 53.7
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 1.4e-06 57.8 142 35.9
A06p09990 Brassica napus HOM05D006796 ORTHO05D008615 1.4e-06 57.8 35 74.3
BraA06t24185Z Brassica rapa HOM05D006796 ORTHO05D008615 1.4e-06 57.8 35 74.3
CSS0026382 Camellia sinensis var. sinensis HOM05D006796 ORTHO05D008615 1.4e-06 57.8 38 71.1
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 1.4e-06 57.8 175 30.9
PSO478G1165 Papaver somniferum HOM05D006796 ORTHO05D008615 1.4e-06 57.8 116 36.2
Potri.010G164400 Populus trichocarpa HOM05D006796 ORTHO05D008615 1.4e-06 57.8 34 79.4
Sabra10G0124800 Salix brachista HOM05D006796 ORTHO05D008615 1.4e-06 57.8 34 79.4
Hund25209 Selenicereus undatus HOM05D006796 ORTHO05D008615 1.4e-06 57.8 126 35.7
TWI31G0717 Tripterygium wilfordii HOM05D006796 ORTHO05D008615 1.4e-06 57.8 62 54.8
TAR371G0712 Trochodendron aralioides HOM05D006796 ORTHO05D008615 1.4e-06 57.8 42 71.4
CiPaw.05G129900 Carya illinoinensis HOM05D006796 ORTHO05D008615 1.8e-06 57.4 126 34.1
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.8e-06 57.4 213 30.5
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 1.8e-06 57.4 221 27.6
Lsat_1_v5_gn_4_10660 Lactuca sativa HOM05D006796 ORTHO05D008615 1.8e-06 57.4 38 71.1
AT1G13990 Arabidopsis thaliana HOM05D006796 ORTHO05D008615 2.4e-06 57.0 38 68.4
CANSAT64G1871 Cannabis sativa HOM05D006796 ORTHO05D008615 2.4e-06 57.0 94 40.4
CARHR014360 Cardamine hirsuta HOM05D006796 ORTHO05D008615 2.4e-06 57.0 38 68.4
ClCG09G022060 Citrullus lanatus HOM05D006796 ORTHO05D008615 2.4e-06 57.0 64 53.1
Cc11_g12630 Coffea canephora HOM05D006796 ORTHO05D008615 2.4e-06 57.0 62 53.2
Thhalv10008453m.g Eutrema salsugineum HOM05D006796 ORTHO05D008615 2.4e-06 57.0 38 68.4
Glyma.02G111300 Glycine max HOM05D006796 ORTHO05D008615 2.4e-06 57.0 33 81.8
Nn4g23271 Nelumbo nucifera HOM05D006796 ORTHO05D008615 2.4e-06 57.0 34 76.5
PSO017G7370 Papaver somniferum HOM05D006796 ORTHO05D008615 2.4e-06 57.0 116 36.2
Actinidia19934 Actinidia chinensis HOM05D006796 ORTHO05D008615 3.1e-06 56.6 33 78.8
Gohir.D04G190901 Gossypium hirsutum HOM05D006796 ORTHO05D008615 3.1e-06 56.6 34 79.4
Gohir.D04G191000 Gossypium hirsutum HOM05D006796 ORTHO05D008615 3.1e-06 56.6 34 79.4
Gorai.012G186400 Gossypium raimondii HOM05D006796 ORTHO05D008615 3.1e-06 56.6 34 79.4
Peaxi162Scf00222g00236 Petunia axillaris HOM05D006796 ORTHO05D008615 3.1e-06 56.6 34 76.5
SalBow1G4829 Salvia bowleyana HOM05D006796 ORTHO05D000018 3.1e-06 56.6 35 77.1
FvH4_4g30770 Fragaria vesca HOM05D006796 ORTHO05D008615 4.1e-06 56.2 34 76.5
FAN12G1163 Fragaria x ananassa HOM05D006796 ORTHO05D008615 4.1e-06 56.2 34 76.5
FAN22G2031 Fragaria x ananassa HOM05D006796 ORTHO05D008615 4.1e-06 56.2 34 76.5
HanXRQChr12g0379181 Helianthus annuus HOM05D006796 ORTHO05D008615 4.1e-06 56.2 34 76.5
Lalb_Chr10g0098461 Lupinus albus HOM05D006796 ORTHO05D008615 4.1e-06 56.2 34 79.4
Rhsim12G0078900 Rhododendron simsii HOM05D006796 ORTHO05D008615 4.1e-06 56.2 66 42.4
RcHm_v2.0_Chr4g0439161 Rosa chinensis HOM05D006796 ORTHO05D008615 4.1e-06 56.2 34 76.5
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 4.1e-06 56.2 161 32.9
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 4.1e-06 56.2 66 50.0
Thecc.02G339900 Theobroma cacao HOM05D006796 ORTHO05D008615 4.1e-06 56.2 34 79.4
MSTRG.13431 Avicennia marina HOM05D006796 ORTHO05D008615 5.3e-06 55.8 38 68.4
BcaC05g25295 Brassica carinata HOM05D006796 ORTHO05D008615 5.3e-06 55.8 46 63.0
MD16G1067400 Malus domestica HOM05D006796 ORTHO05D008615 5.3e-06 55.8 33 78.8
Prupe.1G279300 Prunus persica HOM05D006796 ORTHO05D008615 5.3e-06 55.8 33 78.8
Sc11g0002140 Simmondsia chinensis HOM05D006796 ORTHO05D008615 5.3e-06 55.8 115 38.3
AL1G25830 Arabidopsis lyrata HOM05D006796 ORTHO05D008615 7.0e-06 55.5 38 65.8
Carub.0001s1368 Capsella rubella HOM05D006796 ORTHO05D008615 7.0e-06 55.5 38 65.8
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 7.0e-06 55.5 50 60.0
C05p11750 Brassica napus HOM05D006796 ORTHO05D008615 9.1e-06 55.1 66 45.5
MD13G1068600 Malus domestica HOM05D006796 ORTHO05D008615 9.1e-06 55.1 33 78.8
Sed0012383 Sechium edule HOM05D006796 ORTHO05D008615 9.1e-06 55.1 33 75.8


User provided reference genes

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