Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 1.7e-134 482.6 246 100.0
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 8.8e-102 374.0 248 80.2
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 3.6e-95 352.1 248 75.8
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 1.7e-92 343.2 245 75.1
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 5.0e-89 331.6 249 71.9
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 1.5e-88 330.1 249 71.5
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 1.5e-88 330.1 255 69.0
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 2.6e-85 319.3 259 68.7
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 1.4e-83 313.5 258 67.4
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 1.4e-78 297.0 220 69.5
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 9.8e-77 290.8 206 74.8
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 2.8e-76 289.3 257 63.4
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.4e-75 287.0 257 62.6
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 1.6e-74 283.5 234 65.8
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 2.7e-74 282.7 246 65.4
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 4.5e-74 282.0 247 64.0
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 7.7e-74 281.2 254 63.4
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 2.2e-73 279.6 225 64.9
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 2.9e-73 279.3 258 62.4
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 1.5e-72 276.9 257 61.5
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.5e-72 276.9 220 66.8
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 2.5e-72 276.2 249 60.6
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 3.2e-72 275.8 245 60.4
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 3.2e-72 275.8 255 61.2
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 7.2e-72 274.6 246 62.2
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 9.4e-72 274.2 258 61.6
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 9.4e-72 274.2 251 58.6
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.1e-71 273.1 258 61.2
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 3.6e-71 272.3 222 64.4
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 3.6e-71 272.3 264 59.1
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 3.6e-71 272.3 247 60.3
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 4.7e-71 271.9 245 60.0
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 4.7e-71 271.9 227 60.4
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 4.7e-71 271.9 249 58.6
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 8.0e-71 271.2 248 59.7
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 1.4e-70 270.4 221 65.2
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.8e-70 270.0 258 60.5
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 2.3e-70 269.6 244 63.5
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.0e-70 269.2 254 59.1
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 5.2e-70 268.5 253 57.3
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 5.2e-70 268.5 281 53.0
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 6.8e-70 268.1 249 62.2
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.2e-69 267.3 256 59.0
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.2e-69 267.3 257 57.6
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.5e-69 266.9 257 58.8
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 3.4e-69 265.8 257 59.5
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 3.4e-69 265.8 255 58.4
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 4.4e-69 265.4 254 58.3
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 7.5e-69 264.6 253 57.7
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 7.5e-69 264.6 255 57.6
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 1.7e-68 263.5 257 57.2
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 1.7e-68 263.5 222 64.0
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 1.7e-68 263.5 255 57.3
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 2.2e-68 263.1 248 60.5
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 2.8e-68 262.7 260 57.7
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 2.8e-68 262.7 260 57.7
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.8e-68 262.7 257 57.6
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 3.7e-68 262.3 221 64.3
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 3.7e-68 262.3 255 57.6
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 3.7e-68 262.3 255 58.4
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 4.9e-68 261.9 256 60.2
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 8.3e-68 261.2 254 57.5
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 8.3e-68 261.2 228 61.0
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 1.1e-67 260.8 258 57.0
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 1.4e-67 260.4 252 58.7
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.4e-67 260.4 259 56.8
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.8e-67 260.0 259 59.5
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 3.1e-67 259.2 226 60.6
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 4.1e-67 258.8 261 56.7
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 5.4e-67 258.5 256 57.0
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 1.6e-66 256.9 228 61.8
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.0e-66 256.5 259 57.1
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.0e-66 256.5 256 57.8
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 2.0e-66 256.5 253 58.1
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.7e-66 256.1 226 60.6
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 5.9e-66 255.0 221 61.5
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 7.7e-66 254.6 247 56.7
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 7.7e-66 254.6 226 61.1
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 1.0e-65 254.2 257 55.6
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 1.0e-65 254.2 257 55.6
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.7e-65 253.4 254 57.9
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.3e-65 253.1 240 57.1
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.9e-65 252.7 245 60.8
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 2.9e-65 252.7 254 57.1
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 3.8e-65 252.3 254 55.5
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 3.8e-65 252.3 259 55.6
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 5.0e-65 251.9 254 55.9
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 6.6e-65 251.5 224 60.3
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.1e-64 250.8 253 54.9
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 3.3e-64 249.2 245 54.7
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 5.6e-64 248.4 266 52.6
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 7.3e-64 248.1 255 55.7
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 7.3e-64 248.1 251 55.4
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.2e-63 247.3 259 57.1
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.2e-63 247.3 256 56.2
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 3.6e-63 245.7 246 53.7
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.7e-63 245.4 259 57.1
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 4.7e-63 245.4 251 55.4
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 1.0e-62 244.2 208 65.4
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.4e-62 243.8 218 58.7
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 1.4e-62 243.8 192 65.1
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.3e-62 243.0 226 60.2
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 3.0e-62 242.7 223 59.6
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 4.0e-62 242.3 248 55.2
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 8.9e-62 241.1 208 61.5
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 5.7e-61 238.4 229 56.3
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.2e-60 236.5 247 54.7
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 2.9e-60 236.1 230 56.1
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 3.7e-60 235.7 286 49.3
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.1e-59 234.2 283 49.1
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 3.2e-59 232.6 167 73.7
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 9.2e-59 231.1 229 56.3
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.6e-58 230.3 234 53.8
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 1.6e-58 230.3 252 51.6
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 2.7e-58 229.6 252 51.6
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.7e-58 229.6 283 48.4
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.3e-57 227.3 224 58.0
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 2.3e-57 226.5 175 70.3
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 3.0e-57 226.1 156 73.7
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 1.4e-54 217.2 186 59.7
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.2e-53 214.2 194 62.4
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.5e-53 213.8 224 52.7
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 8.3e-52 208.0 232 52.2
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 7.8e-50 201.4 228 53.1
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 1.7e-49 200.3 154 65.6
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 5.2e-46 188.7 237 47.7
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.3e-44 184.1 251 49.8
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 4.1e-43 179.1 230 46.5
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 7.8e-42 174.9 233 46.4
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 1.7e-41 173.7 122 68.9
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 5.1e-41 172.2 131 63.4
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 5.1e-41 172.2 215 44.7
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 8.6e-41 171.4 181 56.9
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 6.8e-38 161.8 240 40.4
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.7e-33 147.1 116 69.8
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 2.1e-31 140.2 174 51.1
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 1.8e-30 137.1 236 39.4
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.3e-28 131.0 173 49.1
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.9e-28 129.8 131 52.7
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.4e-28 128.3 173 47.4
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.1e-27 127.9 80 73.8
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 1.9e-27 127.1 119 57.1
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 1.6e-26 124.0 89 70.8
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 1.5e-21 107.5 119 49.6
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 1.5e-21 107.5 119 49.6
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 1.5e-21 107.5 119 49.6
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.0e-21 107.1 119 49.6
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 3.2e-19 99.8 148 47.3
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 4.6e-18 95.9 256 30.9
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.9e-16 90.5 217 33.6
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 9.6e-16 88.2 118 45.8
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 2.9e-12 76.6 104 46.2
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 4.2e-11 72.8 59 66.1
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 7.9e-10 68.6 74 52.7
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 7.4e-08 62.0 61 50.8
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 7.4e-08 62.0 40 70.0


User provided reference genes

Program Settings