Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 4.0e-168 594.7 308 100.0
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 6.6e-147 524.2 314 86.6
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 3.3e-146 521.9 311 87.1
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 1.5e-143 513.1 314 85.0
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 4.1e-141 505.0 314 83.1
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 1.6e-140 503.1 317 81.7
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 1.7e-139 499.6 311 83.3
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 1.9e-138 496.1 311 83.0
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 2.8e-137 492.3 314 80.3
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 1.4e-133 479.9 300 82.3
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 4.0e-128 461.8 321 74.5
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 6.8e-128 461.1 321 74.5
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 2.9e-126 455.7 317 73.2
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 3.7e-126 455.3 315 74.6
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.4e-125 453.4 321 74.1
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 1.4e-125 453.4 315 72.7
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 1.6e-124 449.9 312 73.4
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 3.5e-124 448.7 319 73.0
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 4.6e-124 448.4 321 71.7
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 4.6e-124 448.4 321 71.7
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 1.7e-123 446.4 315 72.4
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 1.7e-123 446.4 321 69.8
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 3.9e-123 445.3 323 71.2
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 3.9e-123 445.3 316 72.2
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 2.5e-122 442.6 315 71.7
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 9.5e-122 440.7 318 71.1
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 1.2e-121 440.3 314 74.5
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 1.2e-121 440.3 315 71.7
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 4.7e-121 438.3 317 70.7
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 6.2e-121 438.0 321 69.5
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 8.1e-121 437.6 315 70.5
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 1.1e-120 437.2 323 68.4
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 2.4e-120 436.0 321 68.8
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 3.1e-120 435.6 317 70.0
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 5.2e-120 434.9 305 74.1
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 8.9e-120 434.1 323 68.7
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 2.0e-119 433.0 323 67.8
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 3.4e-119 432.2 321 69.2
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 1.7e-118 429.9 317 69.1
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 2.2e-118 429.5 321 68.5
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 2.9e-118 429.1 323 67.2
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 2.9e-118 429.1 323 67.2
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 2.9e-118 429.1 322 68.6
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 4.9e-118 428.3 321 68.5
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 1.1e-117 427.2 321 69.2
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 1.1e-117 427.2 318 69.8
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 1.4e-117 426.8 317 69.1
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 1.4e-117 426.8 320 69.4
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 7.1e-117 424.5 323 68.7
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 1.2e-116 423.7 320 68.8
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 4.6e-116 421.8 323 65.9
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 4.6e-116 421.8 311 70.4
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 6.0e-116 421.4 321 66.0
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 6.0e-116 421.4 320 68.4
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 7.8e-116 421.0 321 66.0
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 7.8e-116 421.0 299 72.6
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 2.3e-115 419.5 323 65.3
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 3.9e-115 418.7 323 65.3
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 3.9e-115 418.7 330 68.5
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 5.1e-115 418.3 320 67.8
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 6.6e-115 417.9 321 65.7
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 6.6e-115 417.9 322 66.1
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 8.7e-115 417.5 320 67.2
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 1.1e-114 417.2 317 67.5
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 1.9e-114 416.4 322 67.7
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 2.5e-114 416.0 367 59.9
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 2.5e-114 416.0 319 67.4
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 3.3e-114 415.6 313 69.3
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 4.3e-114 415.2 320 66.6
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 7.3e-114 414.5 351 62.4
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.6e-113 413.3 328 66.8
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 2.1e-113 412.9 312 67.3
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 2.1e-113 412.9 301 69.8
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 2.8e-113 412.5 326 65.0
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 2.8e-113 412.5 321 66.4
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 3.6e-113 412.1 315 67.0
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 4.7e-113 411.8 312 67.0
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 1.1e-112 410.6 323 66.6
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 1.5e-111 406.8 315 66.3
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 2.0e-111 406.4 321 65.1
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 2.0e-111 406.4 321 65.1
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 2.6e-111 406.0 319 65.5
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 2.6e-111 406.0 319 65.2
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 1.7e-110 403.3 317 65.9
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 6.4e-110 401.4 317 67.2
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 8.4e-110 401.0 309 66.0
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 3.2e-109 399.1 307 68.1
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 5.4e-109 398.3 321 64.8
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 3.3e-106 389.0 324 64.2
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 7.6e-103 377.9 246 76.0
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 1.3e-102 377.1 275 70.2
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 2.9e-102 375.9 277 69.3
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 1.4e-101 373.6 277 69.3
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 6.2e-89 331.6 257 70.8
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 9.0e-88 327.8 311 55.6
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.0e-87 326.6 314 53.8
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 3.2e-85 319.3 324 52.2
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 1.0e-78 297.7 298 53.4
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 9.7e-74 281.2 186 79.0
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 1.3e-70 270.8 219 61.2
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 2.2e-70 270.0 183 69.4
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 2.3e-67 260.0 175 72.0
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 9.7e-66 254.6 304 47.4
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 3.5e-63 246.1 185 66.5
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 1.4e-56 224.2 299 43.5
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 1.3e-54 217.6 254 52.8
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 1.9e-53 213.8 341 40.8
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.2e-49 200.3 370 36.2
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.2e-49 200.3 370 36.2
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 3.5e-47 193.0 375 33.6
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 1.5e-45 187.6 157 58.6
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 1.4e-43 181.0 304 38.5
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 3.8e-38 162.9 471 27.8
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 9.5e-21 105.1 116 51.7
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 2.8e-20 103.6 71 71.8
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 4.0e-19 99.8 93 53.8
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 1.4e-16 91.3 61 70.5
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 7.0e-16 89.0 171 38.0
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 3.5e-15 86.7 162 38.3
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 4.6e-15 86.3 56 78.6
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 4.6e-15 86.3 83 51.8
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 3.9e-14 83.2 166 34.9
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 4.3e-13 79.7 56 71.4
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 7.3e-13 79.0 56 69.6
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 8.1e-12 75.5 92 48.9
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 8.1e-12 75.5 198 28.8


User provided reference genes

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