Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 3.3e-278 961.1 487 100.0
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 1.2e-243 846.3 485 85.8
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 1.4e-236 822.8 462 88.1
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 5.9e-235 817.4 487 83.4
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 2.8e-216 755.4 467 79.7
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 3.0e-210 735.3 494 77.7
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 5.1e-210 734.6 445 82.7
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 3.5e-203 711.8 478 74.3
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 1.5e-201 706.4 495 72.9
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 4.8e-192 674.9 487 70.2
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 1.1e-188 663.7 478 70.7
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 1.3e-186 656.8 447 73.2
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 2.2e-181 639.4 463 67.4
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 7.1e-180 634.4 429 70.9
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 2.1e-179 632.9 412 73.5
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 1.0e-178 630.6 461 68.5
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 1.0e-178 630.6 466 67.8
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 1.3e-178 630.2 414 72.0
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 2.3e-178 629.4 414 73.4
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 5.1e-178 628.2 436 69.0
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 5.1e-178 628.2 427 71.0
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 1.5e-177 626.7 444 71.6
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 2.5e-177 625.9 436 69.3
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.6e-176 623.2 414 72.9
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 3.1e-175 619.0 441 67.1
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 1.2e-174 617.1 471 63.5
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 1.5e-174 616.7 471 63.5
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 2.0e-174 616.3 419 70.9
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 2.6e-174 615.9 411 72.3
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 2.9e-173 612.5 414 70.0
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 1.1e-172 610.5 447 66.7
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 1.9e-172 609.8 413 71.2
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 5.5e-172 608.2 461 64.6
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 9.3e-172 607.4 471 62.8
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.6e-171 606.7 415 69.6
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 2.7e-171 605.9 412 69.2
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 3.5e-171 605.5 479 62.6
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 7.9e-171 604.4 411 71.3
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 3.9e-170 602.1 438 67.1
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.5e-169 600.1 403 70.2
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 3.3e-169 599.0 411 70.1
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 9.6e-169 597.4 413 70.2
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.4e-167 593.6 423 69.7
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 1.8e-167 593.2 478 63.4
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 6.9e-167 591.3 408 70.6
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 7.6e-166 587.8 398 70.6
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 2.2e-165 586.3 416 67.8
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 5.0e-165 585.1 411 67.9
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 6.5e-165 584.7 488 60.7
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 5.5e-164 581.6 414 68.4
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 1.2e-163 580.5 444 65.8
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 2.1e-163 579.7 414 67.1
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 3.6e-163 578.9 394 69.8
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 6.1e-163 578.2 411 67.6
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 3.0e-162 575.9 419 67.5
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 1.1e-161 573.9 450 64.7
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 2.5e-161 572.8 411 66.4
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 3.3e-161 572.4 514 60.1
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 2.2e-160 569.7 490 61.0
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 2.8e-160 569.3 411 65.7
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 3.7e-160 568.9 414 65.9
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 3.4e-158 562.4 466 60.7
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 4.5e-158 562.0 412 66.3
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 5.0e-157 558.5 411 64.2
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 2.7e-155 552.7 416 63.2
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 1.4e-154 550.4 433 64.4
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 1.8e-154 550.1 411 63.3
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 1.8e-154 550.1 439 63.3
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 3.9e-154 548.9 415 64.3
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 1.1e-153 547.4 413 63.7
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.1e-153 547.4 414 65.0
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 6.3e-152 541.6 440 63.6
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 6.3e-152 541.6 462 57.1
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.7e-149 533.5 445 60.9
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 6.5e-149 531.6 362 70.2
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 1.1e-148 530.8 436 60.8
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 9.4e-148 527.7 411 64.0
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 1.2e-147 527.3 568 50.2
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 2.7e-147 526.2 344 72.7
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 3.6e-147 525.8 454 59.9
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.8e-146 523.5 468 60.0
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 5.7e-145 518.5 401 63.3
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 2.8e-144 516.2 387 65.4
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 1.1e-140 504.2 344 69.2
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.5e-140 503.8 418 62.0
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.6e-139 499.2 446 58.3
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 1.0e-138 497.7 411 58.4
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 2.6e-137 493.0 370 63.0
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 9.7e-137 491.1 370 62.2
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 4.0e-130 469.2 407 57.2
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 2.6e-129 466.5 411 55.2
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 3.1e-127 459.5 344 68.9
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.2e-126 457.6 428 55.6
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 7.2e-124 448.4 324 67.3
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 1.5e-121 440.7 414 55.8
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 2.1e-115 420.2 475 49.9
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 4.4e-113 412.5 445 47.4
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 8.0e-107 391.7 311 63.0
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 3.7e-104 382.9 411 49.1
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 3.9e-101 372.9 246 72.4
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 8.9e-90 335.1 271 61.6
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 4.9e-88 329.3 241 72.2
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 2.2e-80 303.9 275 53.8
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 3.5e-78 296.6 187 72.7
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 9.9e-73 278.5 187 70.6
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 5.1e-69 266.2 229 59.8
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 2.1e-62 244.2 206 63.6
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 1.2e-57 228.4 300 45.0
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 9.0e-50 202.2 160 60.6
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 1.1e-44 185.3 285 40.0
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 9.4e-39 165.6 96 78.1
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.6e-38 164.9 97 76.3
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.4e-37 161.8 168 48.2
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 5.7e-36 156.4 121 60.3
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 6.9e-34 149.4 112 59.8
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.7e-32 144.8 134 55.2
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 5.5e-31 139.8 276 38.0
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 6.1e-30 136.3 207 40.1
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.0e-29 135.6 87 67.8
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 8.8e-29 132.5 111 58.6
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 5.9e-25 119.8 460 27.8
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 5.0e-24 116.7 103 56.3
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 2.0e-20 104.8 96 54.2
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 4.8e-19 100.1 223 32.7
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 4.5e-17 93.6 128 41.4
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 1.1e-15 89.0 109 45.9
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 1.0e-13 82.4 269 25.7
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 8.8e-13 79.3 52 67.3
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 4.4e-12 77.0 477 23.9
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 2.2e-11 74.7 63 52.4
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.7e-11 73.9 48 70.8
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 1.8e-10 71.6 56 55.4
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 7.0e-10 69.7 40 77.5
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 1.3e-08 65.5 49 67.3
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.1e-07 62.4 35 74.3
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 4.2e-07 60.5 35 71.4


User provided reference genes

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