Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.7e-167 592.0 326 100.0
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 5.3e-131 471.5 327 78.0
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 2.9e-129 465.7 332 79.2
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 2.5e-128 462.6 327 80.1
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 3.6e-127 458.8 332 79.2
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 3.7e-124 448.7 350 76.9
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 5.9e-122 441.4 333 75.4
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 1.5e-120 436.8 331 75.8
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 2.1e-119 433.0 332 73.8
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 1.7e-116 423.3 333 70.3
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 3.7e-116 422.2 333 76.0
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 5.4e-115 418.3 333 69.7
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 5.4e-115 418.3 326 73.6
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 1.5e-104 383.6 285 70.2
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 3.3e-104 382.5 335 65.7
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 5.6e-104 381.7 332 64.5
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 5.6e-104 381.7 331 60.4
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.6e-103 380.2 332 62.0
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 2.8e-103 379.4 327 66.1
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 4.7e-103 378.6 334 63.2
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.8e-102 376.7 330 61.5
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 3.1e-102 375.9 332 61.4
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 6.8e-102 374.8 333 60.7
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.2e-101 374.0 331 61.6
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 2.6e-101 372.9 333 60.4
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 2.6e-101 372.9 331 60.7
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 4.4e-101 372.1 331 61.3
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 3.7e-100 369.0 334 61.4
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 6.4e-100 368.2 331 66.5
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.1e-99 367.5 332 61.4
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.9e-99 366.7 334 60.5
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 7.0e-99 364.8 333 60.4
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 1.6e-98 363.6 327 60.9
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 6.0e-98 361.7 334 59.6
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 7.8e-98 361.3 332 56.3
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 1.7e-97 360.1 330 59.1
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 3.0e-97 359.4 334 59.0
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 5.0e-97 358.6 334 59.0
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 8.6e-97 357.8 331 64.0
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 1.1e-96 357.5 332 57.5
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 1.5e-96 357.1 333 58.9
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 1.5e-96 357.1 334 58.7
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.9e-96 356.7 332 60.8
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.5e-96 356.3 333 59.8
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 3.3e-96 355.9 334 58.4
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 3.3e-96 355.9 332 64.2
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.3e-96 355.5 331 59.5
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.6e-96 355.1 331 63.7
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 7.3e-96 354.8 327 59.9
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 1.2e-95 354.0 336 58.3
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.6e-95 353.6 337 58.5
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 2.1e-95 353.2 278 64.7
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.7e-95 352.1 331 62.8
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.2e-95 351.7 337 62.6
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 6.8e-94 348.2 331 61.9
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 3.4e-93 345.9 385 55.8
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.4e-93 345.9 334 56.6
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.8e-93 345.1 337 62.6
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 7.5e-93 344.7 335 58.2
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.7e-92 343.6 327 56.6
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 1.7e-92 343.6 330 57.0
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.2e-92 343.2 332 57.8
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 1.1e-91 340.9 331 55.9
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 2.4e-91 339.7 328 54.6
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 4.1e-91 339.0 336 56.5
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 4.1e-91 339.0 332 54.8
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 5.4e-91 338.6 276 62.3
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 7.1e-91 338.2 331 55.0
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 9.2e-91 337.8 330 56.7
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 9.2e-91 337.8 318 59.1
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 3.5e-90 335.9 325 56.9
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 4.6e-90 335.5 324 59.0
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 7.8e-90 334.7 336 55.4
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 1.3e-89 334.0 331 57.1
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 1.7e-89 333.6 338 55.6
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.7e-89 333.6 330 62.1
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 2.3e-89 333.2 337 54.9
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 3.9e-89 332.4 318 58.2
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 8.6e-89 331.3 283 62.5
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.9e-88 330.1 328 52.4
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.3e-88 329.3 329 52.6
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 6.2e-87 325.1 332 52.1
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.1e-86 324.3 332 51.5
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.8e-86 323.6 330 54.8
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 5.2e-86 322.0 328 57.9
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 8.9e-86 321.2 331 52.3
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 1.5e-85 320.5 333 56.2
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 1.5e-85 320.5 333 56.2
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 1.5e-85 320.5 333 56.2
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.6e-85 319.7 330 52.7
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 7.6e-85 318.2 354 54.2
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 9.9e-85 317.8 373 53.6
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.3e-84 317.4 302 57.6
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 4.9e-84 315.5 335 53.4
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.2e-82 310.8 337 52.5
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 2.1e-82 310.1 336 50.6
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 3.5e-82 309.3 324 52.8
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 6.0e-82 308.5 320 53.8
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.0e-81 307.8 340 51.8
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 6.6e-81 305.1 374 51.3
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.5e-80 303.9 334 53.6
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.5e-80 303.9 334 53.6
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 4.3e-80 302.4 331 51.7
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 5.6e-80 302.0 338 50.9
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 1.6e-79 300.4 273 57.5
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 4.7e-79 298.9 242 62.8
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.4e-78 297.4 332 51.8
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.4e-78 297.4 330 53.3
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 2.0e-77 293.5 330 55.8
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 4.4e-77 292.4 333 50.8
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 5.8e-77 292.0 337 53.1
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.7e-76 290.4 305 52.8
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 3.8e-76 289.3 326 51.5
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 4.9e-76 288.9 338 55.0
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 8.4e-76 288.1 340 49.4
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 1.9e-75 287.0 338 53.8
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 4.2e-75 285.8 338 54.4
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 4.2e-75 285.8 221 67.4
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.4e-75 285.4 338 48.5
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 9.3e-75 284.6 330 53.0
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 9.3e-75 284.6 338 48.8
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.2e-74 284.3 338 48.2
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.6e-74 283.9 328 50.9
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 2.3e-73 280.0 324 52.5
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 8.7e-73 278.1 274 55.8
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 4.3e-72 275.8 327 49.5
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 7.3e-72 275.0 367 50.7
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 4.0e-70 269.2 254 59.1
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 2.0e-69 266.9 344 52.3
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 3.4e-69 266.2 245 60.8
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 2.1e-66 256.9 317 52.4
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 4.3e-64 249.2 261 53.6
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 2.1e-63 246.9 288 50.7
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 2.8e-63 246.5 234 58.1
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 1.4e-62 244.2 176 73.9
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 3.1e-62 243.0 185 67.6
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 1.5e-61 240.7 337 49.3
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 2.0e-61 240.4 164 75.0
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.3e-57 226.9 275 48.0
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.5e-56 223.4 306 46.1
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 5.3e-54 215.7 165 67.3
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 5.8e-53 212.2 216 60.6
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 2.9e-52 209.9 233 48.9
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 3.8e-52 209.5 328 42.1
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 9.3e-51 204.9 260 46.9
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 2.4e-46 190.3 243 44.4
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.1e-42 177.2 201 60.7
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 4.6e-42 176.0 243 42.4
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.0e-41 174.9 201 59.7
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 6.7e-41 172.2 201 54.7
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 6.7e-41 172.2 136 60.3
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.8e-39 166.0 157 61.8
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 8.5e-36 155.2 138 55.1
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.5e-32 144.4 142 55.6
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.7e-32 142.5 117 59.8
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.4e-30 137.9 125 56.0
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.9e-29 132.5 128 57.8
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 3.2e-27 126.7 105 57.1
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 9.4e-27 125.2 139 52.5
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.2e-26 124.8 206 44.7
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 3.6e-26 123.2 208 40.4
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.0e-24 117.5 172 44.8
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 5.7e-24 115.9 98 63.3
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 2.8e-15 87.0 90 50.0
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 1.1e-14 85.1 219 30.1
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 5.9e-13 79.3 142 38.7
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.5e-11 73.9 63 54.0
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 9.4e-11 72.0 63 63.5
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.7e-08 62.8 139 32.4
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 7.5e-08 62.4 36 83.3
MCO08G149 Micromonas commoda HOM05D004073 ORTHO05D004785 2.4e-06 57.4 181 28.7
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 4.1e-06 56.6 231 26.0


User provided reference genes

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