Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 3607.0 1850 100.0
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 3183.7 1853 87.9
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 3103.2 1856 85.8
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 2951.4 1723 87.1
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 2855.5 1856 78.9
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 2807.3 1859 78.2
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 2750.3 1856 76.2
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 2701.8 1871 74.8
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 2698.3 1850 74.4
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 2678.7 1856 75.3
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 2649.4 1884 72.6
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 2244.9 1867 62.1
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 2205.6 1861 62.0
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 2170.2 1861 61.0
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 2152.1 1860 60.5
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2131.3 1861 59.8
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 2108.6 1859 59.5
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 2093.2 1947 57.9
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2088.5 1862 58.8
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2087.8 1861 58.7
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 2085.5 1858 58.7
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 2060.0 1857 57.2
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 2027.3 1864 57.2
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 2023.8 1860 56.7
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 2020.7 1862 57.3
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 2008.4 1860 56.3
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1989.5 1859 56.4
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1963.7 1858 56.3
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1963.0 1858 56.2
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1943.7 1862 56.0
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1908.6 2005 51.7
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1899.8 2048 50.8
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1882.1 1855 53.2
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1880.5 1863 53.2
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1878.6 1860 53.9
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1869.7 1858 51.9
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1861.3 1970 51.5
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1859.7 1865 53.6
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1858.6 1700 56.6
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1857.4 1988 51.2
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1854.7 1710 56.1
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1841.2 1865 53.1
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1836.6 1863 53.4
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1829.3 1860 53.2
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1828.5 1864 53.2
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1824.7 1860 53.0
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1809.3 1877 51.4
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1808.5 1874 51.7
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1769.2 1860 50.2
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1757.3 1855 50.5
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1755.0 1866 51.0
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1745.3 1852 50.3
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1740.7 1852 50.2
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1739.2 1855 49.9
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1739.2 1855 49.9
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1739.2 1855 49.9
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1736.9 1857 49.6
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1735.7 1857 49.4
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1731.1 1853 49.5
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1725.7 1858 51.5
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1723.4 1877 49.8
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1716.8 1859 49.3
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1707.6 1857 48.9
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1691.4 1879 49.1
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1684.1 1502 58.4
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1683.3 1507 57.2
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1655.2 1870 48.6
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1642.5 1448 58.8
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1627.8 1859 47.6
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1626.7 1856 49.1
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1588.2 1969 45.9
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1586.2 1701 49.7
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1563.1 1653 50.2
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1552.7 1889 47.2
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1530.4 1929 45.5
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1505.7 1863 45.6
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1488.8 1864 45.3
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1470.3 1889 46.0
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1427.9 1876 43.6
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1396.7 1376 53.1
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1308.1 1383 51.6
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1302.0 1224 55.2
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1291.9 1901 41.6
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1291.6 2066 39.1
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1273.1 1356 51.0
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1249.6 1300 51.8
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1231.1 1854 39.3
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1189.1 1863 39.2
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1103.2 1180 52.4
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.9e-289 1000.3 970 55.8
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.0e-275 953.7 642 75.7
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.5e-274 948.3 612 79.1
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.4e-268 931.0 1033 48.5
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 6.1e-256 889.0 833 54.4
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 8.5e-242 842.0 938 49.1
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.6e-234 815.8 534 79.0
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 6.8e-231 805.8 643 63.8
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 2.9e-229 800.4 1947 31.5
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 3.2e-212 743.8 728 54.4
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 2.8e-208 730.7 939 46.6
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 5.6e-201 706.4 644 55.6
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 7.1e-188 662.9 839 44.7
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.4e-183 648.7 825 44.2
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.9e-181 640.2 433 74.6
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.0e-173 615.9 530 58.1
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 2.9e-173 614.4 1148 36.3
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.5e-172 611.3 789 42.3
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 2.9e-165 587.8 1847 27.8
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.5e-164 584.7 372 79.3
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 6.1e-163 580.1 589 54.5
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.0e-149 533.9 341 81.8
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 1.1e-127 463.0 428 55.1
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 2.7e-126 458.4 303 77.9
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 1.4e-122 446.0 439 54.4
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 9.2e-119 433.3 404 55.2
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 3.2e-111 408.3 455 49.9
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.0e-109 403.3 632 38.3
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 3.4e-97 361.7 352 54.0
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 5.4e-95 354.4 343 55.1
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.5e-92 346.3 337 53.4
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 4.9e-88 331.3 431 44.8
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 8.4e-80 303.9 444 37.8
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 1.2e-78 300.1 400 45.5
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.3e-77 296.6 189 81.5
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 2.1e-75 289.3 548 35.9
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 3.4e-73 282.0 333 45.0
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 1.3e-72 280.0 275 53.8
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.1e-66 260.4 617 29.7
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.5e-60 240.0 260 50.0
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 1.6e-59 236.5 208 61.1
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.1e-53 214.9 147 74.1
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 1.5e-52 213.4 194 60.8
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 2.5e-52 212.6 825 25.9
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.2e-49 203.8 226 50.9
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.9e-48 199.1 267 44.2
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.2e-47 195.3 258 46.5
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 1.3e-43 183.7 148 59.5
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 2.0e-41 176.4 161 52.8
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.6e-41 176.0 279 40.1
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 3.8e-40 172.2 141 61.7
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.5e-40 171.4 105 80.0
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 2.1e-38 166.4 868 25.6
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 5.1e-37 161.8 213 45.5
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.8e-37 161.0 110 77.3
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 5.7e-36 158.3 201 45.8
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 7.4e-36 157.9 174 50.6
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.8e-35 155.2 175 50.9
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 1.1e-34 154.1 143 58.7
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 2.4e-34 152.9 131 59.5
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 5.9e-33 148.3 186 45.2
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 7.7e-33 147.9 152 50.7
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 9.4e-31 141.0 224 42.9
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 4.7e-30 138.7 132 56.8
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.0e-29 137.5 134 55.2
TPR.G14702 Trifolium pratense HOM05D000127 ORTHO05D000243 2.3e-29 136.3 76 88.2
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 6.7e-29 134.8 131 55.7
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 6.3e-27 128.3 123 51.2
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 3.5e-25 122.5 85 67.1
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 5.5e-23 115.2 137 46.7
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 3.6e-22 112.5 103 56.3
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 2.3e-21 109.8 235 33.2
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.4e-18 99.8 75 58.7
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 5.3e-18 98.6 52 88.5
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 1.9e-15 90.1 93 49.5
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 7.2e-15 88.2 68 63.2
Psat7g185600 Pisum sativum HOM05D000747 ORTHO05D004807 3.4e-12 79.3 72 59.7
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 4.4e-12 79.0 139 34.5
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 7.5e-12 78.2 128 39.1
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 9.1e-10 71.2 71 50.7
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 2.0e-09 70.1 59 54.2
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 2.0e-09 70.1 59 54.2
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 2.9e-08 66.2 87 46.0
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 1.9e-07 63.5 149 31.5
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 2.5e-07 63.2 121 33.9
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 4.2e-07 62.4 53 64.2


User provided reference genes

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