Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04142_v3 Cicer arietinum L. HOM05D005478 ORTHO05D006426 7.2e-79 297.4 169 100.0
Medtr6g004420 Medicago truncatula HOM05D005478 ORTHO05D006426 2.6e-57 225.7 170 71.2
TPR.G31952 Trifolium pratense HOM05D005478 ORTHO05D006426 1.0e-56 223.8 172 72.1
Psat1g053440 Pisum sativum HOM05D005478 ORTHO05D006426 1.9e-47 193.0 174 64.4
VMungo0464G1533 Vigna mungo HOM05D005478 ORTHO05D006426 2.2e-43 179.5 171 58.5
Glyma.05G002400 Glycine max HOM05D005478 ORTHO05D006426 9.1e-42 174.1 167 61.7
Lj2g0025845 Lotus japonicus HOM05D005478 ORTHO05D006426 4.5e-41 171.8 167 67.1
Glyma.19G002600 Glycine max HOM05D005478 ORTHO05D006426 4.2e-39 165.2 165 64.8
TWI56G0849 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 4.9e-35 151.8 171 48.5
Lalb_Chr22g0360721 Lupinus albus HOM05D005478 ORTHO05D006426 8.3e-35 151.0 174 51.1
Phvul.004G004600 Phaseolus vulgaris HOM05D005478 ORTHO05D006426 8.3e-35 151.0 170 59.4
GSVIVG01032384001 Vitis vinifera HOM05D005478 ORTHO05D006426 8.3e-35 151.0 166 50.6
TWI36G1604 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 1.8e-34 149.8 172 51.2
QL02p074001 Quercus lobata HOM05D005478 ORTHO05D006426 4.1e-34 148.7 169 50.9
TWI12G0237 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 5.0e-32 141.7 172 49.4
CiPaw.03G045600 Carya illinoinensis HOM05D005478 ORTHO05D006426 6.6e-32 141.4 177 47.5
arahy.Tifrunner.gnm1.ann1.47572L Arachis hypogaea HOM05D005478 ORTHO05D006426 1.5e-31 140.2 183 48.6
Actinidia36124 Actinidia chinensis HOM05D005478 ORTHO05D006426 1.9e-31 139.8 177 46.9
AL5G16940 Arabidopsis lyrata HOM05D005478 ORTHO05D006426 2.5e-31 139.4 185 43.8
Cpa.g.sc108.77 Carica papaya HOM05D005478 ORTHO05D006426 4.3e-31 138.7 184 47.3
CiPaw.04G029700 Carya illinoinensis HOM05D005478 ORTHO05D006426 5.6e-31 138.3 174 49.4
Ciclev10016916m.g Citrus clementina HOM05D005478 ORTHO05D006426 9.5e-31 137.5 174 48.9
COL.COLO4_30424 Corchorus olitorius HOM05D005478 ORTHO05D006426 2.8e-30 136.0 179 44.7
Thhalv10004961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 4.7e-30 135.2 180 43.9
Prupe.3G293900 Prunus persica HOM05D005478 ORTHO05D006426 8.0e-30 134.4 184 47.3
ClCG10G013780 Citrullus lanatus HOM05D005478 ORTHO05D006426 1.0e-29 134.0 177 46.9
THA.LOC104825319 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 1.0e-29 134.0 181 43.6
Sp2g16690 Schrenkiella parvula HOM05D005478 ORTHO05D006426 2.3e-29 132.9 180 43.9
Migut.K01412 Erythranthe guttata HOM05D005478 ORTHO05D006426 4.0e-29 132.1 173 54.3
CsaV3_3G042880 Cucumis sativus L. HOM05D005478 ORTHO05D006426 5.2e-29 131.7 177 44.1
Hma1.2p1_0818F.1_g223270 Hydrangea macrophylla HOM05D005478 ORTHO05D006426 2.0e-28 129.8 173 45.1
CARHR148890 Cardamine hirsuta HOM05D005478 ORTHO05D006426 2.6e-28 129.4 182 43.4
AUR62041940 Chenopodium quinoa HOM05D005478 ORTHO05D006426 2.6e-28 129.4 180 42.2
Actinidia05981 Actinidia chinensis HOM05D005478 ORTHO05D006426 3.4e-28 129.0 167 49.7
AUR62028419 Chenopodium quinoa HOM05D005478 ORTHO05D006426 3.4e-28 129.0 180 41.7
PGR142G0633 Punica granatum HOM05D005478 ORTHO05D006426 3.4e-28 129.0 177 46.3
arahy.Tifrunner.gnm1.ann1.WAXE9D Arachis hypogaea HOM05D005478 ORTHO05D006426 5.8e-28 128.3 209 43.5
Potri.001G343200 Populus trichocarpa HOM05D005478 ORTHO05D006426 5.8e-28 128.3 167 47.3
AT3G27520 Arabidopsis thaliana HOM05D005478 ORTHO05D006426 7.5e-28 127.9 186 41.9
BraA09t35982Z Brassica rapa HOM05D005478 ORTHO05D006426 7.5e-28 127.9 175 44.0
MELO3C026588.2 Cucumis melo HOM05D005478 ORTHO05D006426 7.5e-28 127.9 177 44.6
Sabra16G0222600 Salix brachista HOM05D005478 ORTHO05D006426 7.5e-28 127.9 169 46.7
Carub.0005s0595 Capsella rubella HOM05D005478 ORTHO05D006426 9.8e-28 127.5 185 43.8
MSTRG.3284 Avicennia marina HOM05D005478 ORTHO05D006426 1.3e-27 127.1 173 46.2
Oeu033728.1 Olea europaea HOM05D005478 ORTHO05D006426 1.3e-27 127.1 175 44.0
Lalb_Chr24g0403571 Lupinus albus HOM05D005478 ORTHO05D006426 2.2e-27 126.3 175 51.4
Thhalv10027961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 2.9e-27 125.9 176 43.2
Cfa007338 Carpinus fangiana HOM05D005478 ORTHO05D006426 3.7e-27 125.6 179 50.8
Atru.chr6.2431 Acer truncatum HOM05D005478 ORTHO05D006426 6.4e-27 124.8 172 47.7
A09p03440 Brassica napus HOM05D005478 ORTHO05D006426 6.4e-27 124.8 175 43.4
BolC9t53284H Brassica oleracea HOM05D005478 ORTHO05D006426 6.4e-27 124.8 171 43.9
Duzib160G0719 Durio zibethinus HOM05D005478 ORTHO05D006426 6.4e-27 124.8 175 41.7
Duzib235G1061 Durio zibethinus HOM05D005478 ORTHO05D006426 8.3e-27 124.4 178 42.1
TAR371G0105 Trochodendron aralioides HOM05D005478 ORTHO05D006426 8.3e-27 124.4 171 47.4
Gohir.A09G082300 Gossypium hirsutum HOM05D005478 ORTHO05D006426 1.1e-26 124.0 172 50.6
Actinidia18441 Actinidia chinensis HOM05D005478 ORTHO05D006426 1.9e-26 123.2 175 44.6
Haze_14759 Corylus avellana HOM05D005478 ORTHO05D006426 1.9e-26 123.2 181 48.1
DCAR_011260 Daucus carota HOM05D005478 ORTHO05D006426 1.9e-26 123.2 169 46.2
BcaC04g23900 Brassica carinata HOM05D005478 ORTHO05D006426 2.4e-26 122.9 171 42.7
C09p03650 Brassica napus HOM05D005478 ORTHO05D006426 2.4e-26 122.9 171 42.7
Gohir.D09G082100 Gossypium hirsutum HOM05D005478 ORTHO05D006426 7.0e-26 121.3 172 50.6
Gorai.006G097900 Gossypium raimondii HOM05D005478 ORTHO05D006426 7.0e-26 121.3 172 50.6
Lsat_1_v5_gn_0_18280 Lactuca sativa HOM05D005478 ORTHO05D006426 9.2e-26 120.9 179 45.3
TAR629G3442 Trochodendron aralioides HOM05D005478 ORTHO05D006426 1.6e-25 120.2 164 48.2
Sed0022021 Sechium edule HOM05D005478 ORTHO05D006426 4.6e-25 118.6 172 42.4
MSTRG.15534 Avicennia marina HOM05D005478 ORTHO05D006426 6.0e-25 118.2 173 43.9
CANSAT64G0255 Cannabis sativa HOM05D005478 ORTHO05D006426 6.0e-25 118.2 175 44.6
Sopen02g038220 Solanum pennellii HOM05D005478 ORTHO05D006426 1.0e-24 117.5 166 45.2
unitig_88.g27693 Utricularia gibba HOM05D000631 ORTHO05D000524 1.3e-24 117.1 167 43.7
Thecc.06G091700 Theobroma cacao HOM05D005478 ORTHO05D006426 2.3e-24 116.3 178 40.4
Aa31LG2G5140 Aethionema arabicum HOM05D005478 ORTHO05D006426 3.0e-24 115.9 192 38.0
FAN05G2721 Fragaria x ananassa HOM05D005478 ORTHO05D006426 3.0e-24 115.9 175 48.6
SGA_v2.0_scaffold47G17517 Striga asiatica HOM05D005478 ORTHO05D006426 3.0e-24 115.9 176 42.0
FAN02G1690 Fragaria x ananassa HOM05D005478 ORTHO05D006426 3.9e-24 115.5 176 48.9
FvH4_6g51790 Fragaria vesca HOM05D005478 ORTHO05D006426 5.0e-24 115.2 178 50.0
FAN09G1593 Fragaria x ananassa HOM05D005478 ORTHO05D006426 6.6e-24 114.8 178 50.0
Nn3g16686 Nelumbo nucifera HOM05D005478 ORTHO05D006426 6.6e-24 114.8 162 53.7
PGSC0003DMG400012636 Solanum tuberosum HOM05D005478 ORTHO05D006426 6.6e-24 114.8 166 45.2
BcaC06g30982 Brassica carinata HOM05D005478 ORTHO05D006426 8.6e-24 114.4 177 40.1
FAN14G4849 Fragaria x ananassa HOM05D005478 ORTHO05D006426 8.6e-24 114.4 178 50.0
BcaB04g19441 Brassica carinata HOM05D005478 ORTHO05D006426 1.1e-23 114.0 176 40.9
Solyc02g093450.3 Solanum lycopersicum HOM05D005478 ORTHO05D006426 1.5e-23 113.6 166 44.6
Sc07g0003180 Simmondsia chinensis HOM05D005478 ORTHO05D006426 1.9e-23 113.2 169 40.2
ATR0824G160 Amborella trichopoda HOM05D005478 ORTHO05D006426 1.6e-22 110.2 160 40.6
Manes.17G111100 Manihot esculenta HOM05D005478 ORTHO05D006426 2.1e-22 109.8 173 40.5
Rhsim10G0014600 Rhododendron simsii HOM05D005478 ORTHO05D006426 4.7e-22 108.6 172 44.8
HPP92_006182 Vanilla planifolia HOM05D005478 ORTHO05D006426 6.2e-22 108.2 162 40.7
MD09G1022900 Malus domestica HOM05D005478 ORTHO05D006426 8.0e-22 107.8 184 40.2
Oeu048609.1 Olea europaea HOM05D005478 ORTHO05D006426 8.0e-22 107.8 178 46.1
PSO478G1356 Papaver somniferum HOM05D005478 ORTHO05D006426 8.0e-22 107.8 183 47.5
Peaxi162Scf00700g00430 Petunia axillaris HOM05D005478 ORTHO05D006426 1.1e-21 107.5 161 41.6
PSO017G4510 Papaver somniferum HOM05D005478 ORTHO05D006426 1.4e-21 107.1 182 47.3
Hund15527 Selenicereus undatus HOM05D005478 ORTHO05D006426 1.4e-21 107.1 173 39.9
A06p41110 Brassica napus HOM05D005478 ORTHO05D006426 1.8e-21 106.7 180 38.3
C07p36630 Brassica napus HOM05D005478 ORTHO05D006426 1.8e-21 106.7 179 38.0
BraA06t27034Z Brassica rapa HOM05D005478 ORTHO05D006426 1.8e-21 106.7 180 38.3
THA.LOC104825211 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 2.3e-21 106.3 134 45.5
Duzib192G0894 Durio zibethinus HOM05D005478 ORTHO05D006426 3.1e-21 105.9 171 39.2
CSS0007505 Camellia sinensis var. sinensis HOM05D005478 ORTHO05D006426 1.2e-20 104.0 180 50.0
CDE09G0806 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 1.2e-20 104.0 175 32.6
Eucgr.I01730 Eucalyptus grandis HOM05D005478 ORTHO05D006426 1.2e-20 104.0 179 45.3
Aqoxy5G03740 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 5.8e-20 101.7 177 36.7
vmacro05877 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 5.8e-20 101.7 211 41.2
MD17G1022200 Malus domestica HOM05D005478 ORTHO05D006426 7.5e-20 101.3 183 40.4
CDE02G4674 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 9.8e-20 100.9 174 33.9
BcaC06g33809 Brassica carinata HOM05D005478 ORTHO05D006426 2.9e-19 99.4 179 36.9
BolC7t44179H Brassica oleracea HOM05D005478 ORTHO05D006426 4.9e-19 98.6 179 36.3
ECA238G3024 Erigeron canadensis HOM05D005478 ORTHO05D006426 6.4e-19 98.2 165 46.1
HanXRQChr07g0199031 Helianthus annuus HOM05D005478 ORTHO05D006426 1.1e-18 97.4 173 40.5
Lsat_1_v5_gn_2_91160 Lactuca sativa HOM05D005478 ORTHO05D006426 1.1e-18 97.4 168 43.5
PSO063G0871 Papaver somniferum HOM05D005478 ORTHO05D006426 2.4e-18 96.3 165 37.6
RcHm_v2.0_Chr2g0173291 Rosa chinensis HOM05D005478 ORTHO05D006426 3.2e-18 95.9 175 46.3
HanXRQChr14g0451171 Helianthus annuus HOM05D005478 ORTHO05D006426 7.0e-18 94.7 173 46.2
PSO754G0087 Papaver somniferum HOM05D005478 ORTHO05D006426 9.2e-18 94.4 165 38.2
MBI14_g36718_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 2.1e-17 93.2 171 45.0
SEGI_00200 Sequoiadendron giganteum HOM05D005478 ORTHO05D006426 1.3e-16 90.5 154 38.3
vmacro18294 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 1.7e-16 90.1 211 37.4
SGA_v2.0_scaffold30G12408 Striga asiatica HOM05D005478 ORTHO05D006426 5.1e-16 88.6 179 44.7
Aqoxy1G02464 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 8.6e-16 87.8 156 35.9
Ah.02g128220 Amaranthus hybridus HOM05D005478 ORTHO05D006426 9.5e-15 84.3 174 33.9
Nn3g16214 Nelumbo nucifera HOM05D005478 ORTHO05D006426 3.7e-11 72.4 79 50.6
Dinv33426 Davidia involucrata HOM05D005478 ORTHO05D006426 1.9e-10 70.1 54 64.8
Cc07_g01510 Coffea canephora HOM05D005478 ORTHO05D006426 1.3e-08 63.9 83 44.6
Gohir.D05G130900 Gossypium hirsutum HOM05D005478 ORTHO05D006426 3.9e-08 62.4 105 39.0
Os02g0595300 Oryza sativa ssp. japonica HOM05D005478 ORTHO05D006426 5.1e-08 62.0 179 26.8
EL10Ac6g14100 Beta vulgaris HOM05D005478 ORTHO05D006426 6.6e-08 61.6 126 35.7
Nitab4.5_0005593g0050 Nicotiana tabacum HOM05D005478 ORTHO05D006426 2.5e-07 59.7 157 29.9
Nitab4.5_0000326g0190 Nicotiana tabacum HOM05D006502 ORTHO05D007704 5.6e-07 58.5 49 57.1
Zm00001eb183740 Zea mays HOM05D044595 ORTHO05D006426 8.1e-06 54.7 170 28.8


User provided reference genes

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