Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 5.3e-66 254.2 130 100.0
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 1.4e-34 149.8 132 62.1
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 3.2e-34 148.7 135 63.0
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 2.8e-30 135.6 91 73.6
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 4.7e-30 134.8 84 77.4
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 8.1e-30 134.0 84 75.0
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 8.1e-30 134.0 88 71.6
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 3.1e-29 132.1 85 74.1
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 5.2e-29 131.3 80 77.5
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 5.2e-29 131.3 80 77.5
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 6.8e-29 131.0 82 75.6
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 6.8e-29 131.0 119 58.8
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 1.2e-28 130.2 87 66.7
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 2.0e-28 129.4 87 71.3
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 2.0e-28 129.4 106 62.3
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 2.6e-28 129.0 85 71.8
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 2.6e-28 129.0 131 53.4
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 4.4e-28 128.3 87 69.0
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 4.4e-28 128.3 87 69.0
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 4.4e-28 128.3 87 70.1
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 5.8e-28 127.9 87 70.1
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 7.5e-28 127.5 95 62.1
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 7.5e-28 127.5 88 69.3
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 9.9e-28 127.1 95 67.4
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.3e-27 126.7 83 72.3
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.3e-27 126.7 83 72.3
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 1.3e-27 126.7 126 57.1
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 1.7e-27 126.3 82 72.0
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 1.7e-27 126.3 81 72.8
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 1.7e-27 126.3 104 59.6
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 2.2e-27 125.9 86 68.6
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 2.2e-27 125.9 88 67.0
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 2.2e-27 125.9 115 60.0
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 2.9e-27 125.6 153 49.0
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 2.9e-27 125.6 153 49.0
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 3.7e-27 125.2 80 75.0
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 3.7e-27 125.2 83 71.1
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 3.7e-27 125.2 83 71.1
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.7e-27 125.2 134 51.5
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 3.7e-27 125.2 80 72.5
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 4.9e-27 124.8 128 55.5
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 4.9e-27 124.8 80 71.2
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 4.9e-27 124.8 89 65.2
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 8.3e-27 124.0 149 51.7
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 8.3e-27 124.0 86 67.4
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 8.3e-27 124.0 89 65.2
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 8.3e-27 124.0 89 65.2
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 1.1e-26 123.6 81 71.6
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.9e-26 122.9 82 70.7
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 2.4e-26 122.5 87 66.7
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 2.4e-26 122.5 80 75.0
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 2.4e-26 122.5 88 67.0
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 3.2e-26 122.1 87 65.5
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 3.2e-26 122.1 87 65.5
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 3.2e-26 122.1 87 65.5
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 3.2e-26 122.1 83 68.7
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 5.4e-26 121.3 86 62.8
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 7.1e-26 120.9 98 56.1
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 7.1e-26 120.9 107 57.9
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 1.2e-25 120.2 143 47.6
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 1.2e-25 120.2 124 50.0
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 1.2e-25 120.2 88 62.5
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 1.2e-25 120.2 81 67.9
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 1.6e-25 119.8 88 64.8
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.6e-25 119.8 78 71.8
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.6e-25 119.8 89 62.9
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.1e-25 119.4 78 73.1
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 2.1e-25 119.4 85 70.6
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 2.7e-25 119.0 80 63.8
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 3.5e-25 118.6 80 70.0
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 3.5e-25 118.6 133 48.9
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 3.5e-25 118.6 88 65.9
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 3.5e-25 118.6 88 62.5
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 4.6e-25 118.2 101 59.4
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 4.6e-25 118.2 147 46.9
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 6.0e-25 117.9 143 47.6
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 6.0e-25 117.9 136 51.5
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 7.8e-25 117.5 80 68.8
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 7.8e-25 117.5 130 49.2
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 7.8e-25 117.5 93 60.2
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 1.0e-24 117.1 79 70.9
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 1.0e-24 117.1 144 48.6
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 1.0e-24 117.1 133 48.9
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.0e-24 117.1 157 47.1
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 1.3e-24 116.7 80 68.8
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 1.3e-24 116.7 135 48.9
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.3e-24 116.7 89 61.8
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.7e-24 116.3 74 75.7
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 2.3e-24 115.9 139 49.6
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 2.3e-24 115.9 88 64.8
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 3.0e-24 115.5 79 68.4
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 3.9e-24 115.2 79 68.4
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 3.9e-24 115.2 79 68.4
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 3.9e-24 115.2 88 63.6
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 5.1e-24 114.8 79 68.4
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 8.6e-24 114.0 76 71.1
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 1.1e-23 113.6 116 50.9
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 1.1e-23 113.6 127 50.4
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 2.5e-23 112.5 82 64.6
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 4.3e-23 111.7 86 61.6
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 4.3e-23 111.7 81 65.4
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 5.6e-23 111.3 82 63.4
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 5.6e-23 111.3 86 57.0
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 7.3e-23 110.9 82 63.4
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 7.3e-23 110.9 81 63.0
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 1.6e-22 109.8 82 62.2
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 2.1e-22 109.4 82 63.4
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 2.1e-22 109.4 121 51.2
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 3.6e-22 108.6 84 61.9
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 3.6e-22 108.6 108 49.1
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 6.2e-22 107.8 113 46.0
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 2.4e-21 105.9 81 60.5
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 4.0e-21 105.1 105 48.6
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 8.9e-21 104.0 136 41.2
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 2.0e-20 102.8 74 67.6
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 2.0e-20 102.8 81 58.0
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 2.6e-20 102.4 123 50.4
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.4e-20 102.1 70 70.0
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 4.4e-20 101.7 127 48.8
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 4.4e-20 101.7 87 57.5
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 4.4e-20 101.7 81 56.8
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 4.4e-20 101.7 115 46.1
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 5.8e-20 101.3 141 40.4
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 9.9e-20 100.5 80 53.8
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.3e-19 100.1 86 59.3
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.7e-19 99.8 68 70.6
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 6.4e-19 97.8 85 54.1
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 1.2e-17 93.6 68 64.7
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 1.6e-17 93.2 124 44.4
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 1.6e-17 93.2 79 57.0
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 2.1e-17 92.8 81 50.6
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 3.5e-17 92.0 107 51.4
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 3.5e-17 92.0 87 49.4
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 4.6e-17 91.7 128 40.6
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.0e-16 90.5 89 47.2
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.3e-16 90.1 89 48.3
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 3.9e-16 88.6 87 44.8
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 4.3e-15 85.1 74 54.1
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 9.6e-15 84.0 76 55.3
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 9.6e-15 84.0 76 55.3
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 1.1e-13 80.5 62 59.7
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.4e-13 80.1 87 46.0
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.4e-13 80.1 87 46.0
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 3.2e-10 68.9 75 44.0
CDE12G0350 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 2.1e-09 66.2 42 76.2
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 8.7e-08 60.8 50 58.0
Actinidia19406 Actinidia chinensis HOM05D005289 ORTHO05D006346 2.8e-06 55.8 40 60.0


User provided reference genes

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