Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04109_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 7.2e-126 454.1 266 100.0
Ca_04118_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 7.2e-126 454.1 266 100.0
Psat3g196520 Pisum sativum HOM05D007678 ORTHO05D009658 1.5e-107 393.3 233 88.8
Medtr7g009670 Medicago truncatula HOM05D007678 ORTHO05D009658 2.0e-107 392.9 239 86.2
Lj1g0010481 Lotus japonicus HOM05D007678 ORTHO05D009658 5.4e-97 358.2 210 87.6
Glyma.09G240200 Glycine max HOM05D007678 ORTHO05D009658 1.7e-90 336.7 236 76.7
Lalb_Chr17g0337231 Lupinus albus HOM05D007678 ORTHO05D009658 9.2e-89 330.9 222 77.5
Prupe.2G048500 Prunus persica HOM05D007678 ORTHO05D009658 3.7e-82 308.9 215 74.4
QL04p021923 Quercus lobata HOM05D007678 ORTHO05D009658 1.4e-81 307.0 226 72.6
Atru.chr2.1713_Atru.chr2.1714 Acer truncatum HOM05D007678 ORTHO05D009658 7.1e-81 304.7 228 70.2
Haze_02966 Corylus avellana HOM05D007678 ORTHO05D009658 7.8e-80 301.2 246 68.3
MD02G1272300 Malus domestica HOM05D007678 ORTHO05D009658 1.7e-79 300.1 215 71.6
arahy.Tifrunner.gnm1.ann1.EB95VJ Arachis hypogaea HOM05D007678 ORTHO05D009658 1.5e-78 297.0 240 72.1
Dinv31528 Davidia involucrata HOM05D007678 ORTHO05D009658 9.5e-78 294.3 213 72.8
Potri.001G033500 Populus trichocarpa HOM05D007678 ORTHO05D009658 1.6e-77 293.5 213 72.8
Actinidia01693 Actinidia chinensis HOM05D007678 ORTHO05D009658 2.4e-76 289.7 235 67.2
RcHm_v2.0_Chr1g0328821 Rosa chinensis HOM05D007678 ORTHO05D009658 4.0e-76 288.9 230 67.0
FvH4_7g04260 Fragaria vesca HOM05D007678 ORTHO05D009658 3.4e-75 285.8 237 65.0
TWI38G1059 Tripterygium wilfordii HOM05D007678 ORTHO05D009658 1.3e-74 283.9 233 65.7
FAN10G0661 Fragaria x ananassa HOM05D007678 ORTHO05D009658 1.7e-74 283.5 237 65.0
Nn7g37012 Nelumbo nucifera HOM05D007678 ORTHO05D009658 6.4e-74 281.6 228 63.2
Duzib106G1843 Durio zibethinus HOM05D007678 ORTHO05D009658 9.2e-73 277.7 214 69.2
Thecc.10G137600 Theobroma cacao HOM05D007678 ORTHO05D009658 1.2e-72 277.3 208 70.2
TAR623G0324 Trochodendron aralioides HOM05D007678 ORTHO05D009658 3.5e-72 275.8 218 67.4
ECA248G0545 Erigeron canadensis HOM05D007678 ORTHO05D009658 3.3e-70 269.2 211 66.8
Gohir.D10G198600 Gossypium hirsutum HOM05D007678 ORTHO05D009658 5.6e-70 268.5 210 67.1
Manes.04G155050 Manihot esculenta HOM05D007678 ORTHO05D009658 7.3e-70 268.1 254 59.4
Sed0019894 Sechium edule HOM05D000001 ORTHO05D000003 1.6e-69 266.9 230 63.9
PGSC0003DMG401028118 Solanum tuberosum HOM05D007678 ORTHO05D009658 2.1e-69 266.5 241 60.2
Gorai.011G222500 Gossypium raimondii HOM05D007678 ORTHO05D009658 4.7e-69 265.4 210 66.2
QL04p022035 Quercus lobata HOM05D007678 ORTHO05D009658 1.1e-68 264.2 189 72.0
Ah.12g064780 Amaranthus hybridus HOM05D007678 ORTHO05D009658 1.4e-68 263.8 225 61.3
Sabra01G0023800 Salix brachista HOM05D007678 ORTHO05D009658 9.0e-68 261.2 258 58.1
Solyc10g081280.2 Solanum lycopersicum HOM05D007678 ORTHO05D009658 9.0e-68 261.2 219 62.6
SalBow6G2419 Salvia bowleyana HOM05D007678 ORTHO05D009658 1.5e-67 260.4 237 59.1
Sopen10g031780 Solanum pennellii HOM05D007678 ORTHO05D009658 1.5e-67 260.4 220 61.8
Glyma.18G256300 Glycine max HOM05D007678 ORTHO05D009658 3.4e-67 259.2 217 69.1
Oeu044217.3 Olea europaea HOM05D007678 ORTHO05D009658 7.6e-67 258.1 256 55.5
MELO3C034052.2 Cucumis melo HOM05D007678 ORTHO05D009658 2.2e-66 256.5 226 61.9
HanXRQChr12g0376111 Helianthus annuus HOM05D007678 ORTHO05D009658 2.2e-66 256.5 224 62.9
MBI13_g30074_MAGBIO Magnolia biondii HOM05D007678 ORTHO05D009658 6.4e-66 255.0 229 62.0
COL.COLO4_04659 Corchorus olitorius HOM05D007678 ORTHO05D009658 8.4e-66 254.6 238 60.1
DCAR_001914 Daucus carota HOM05D007678 ORTHO05D009658 4.2e-65 252.3 211 63.0
Migut.J01589 Erythranthe guttata HOM05D007678 ORTHO05D009658 4.2e-65 252.3 219 59.4
PGR031G1114 Punica granatum HOM05D007678 ORTHO05D009658 4.2e-65 252.3 230 59.1
VMungo1383G0210 Vigna mungo HOM05D000430 ORTHO05D009658 1.6e-64 250.4 157 84.1
Eucgr.G03196 Eucalyptus grandis HOM05D007678 ORTHO05D009658 6.0e-64 248.4 228 60.5
ATR0307G037 Amborella trichopoda HOM05D007678 ORTHO05D009658 3.0e-63 246.1 211 59.2
Lsat_1_v5_gn_7_114920 Lactuca sativa HOM05D007678 ORTHO05D009658 3.0e-63 246.1 233 59.2
Gohir.A10G190900 Gossypium hirsutum HOM05D007678 ORTHO05D009658 5.6e-62 241.9 193 65.8
FAN06G1516 Fragaria x ananassa HOM05D007678 ORTHO05D009658 1.3e-61 240.7 266 54.9
Sc10g0003150 Simmondsia chinensis HOM05D007678 ORTHO05D009658 1.8e-60 236.9 209 61.2
unitig_37.g12769 Utricularia gibba HOM05D007678 ORTHO05D009658 5.3e-60 235.3 207 57.5
Peaxi162Scf00153g00057 Petunia axillaris HOM05D007678 ORTHO05D009658 1.2e-59 234.2 193 63.7
CiPaw.14G011000 Carya illinoinensis HOM05D007678 ORTHO05D009658 2.6e-59 233.0 189 66.7
EL10Ac2g02701 Beta vulgaris HOM05D007678 ORTHO05D009658 1.3e-58 230.7 211 59.7
vmacro20847 Vaccinium macrocarpon HOM05D007678 ORTHO05D009658 1.3e-58 230.7 240 55.8
CAN.G128.118 Capsicum annuum HOM05D001269 ORTHO05D001083 4.9e-58 228.8 189 64.0
CDE09G0612 Ceratophyllum demersum HOM05D007678 ORTHO05D009658 6.4e-58 228.4 197 61.9
Hund13420 Selenicereus undatus HOM05D007678 ORTHO05D009658 1.1e-57 227.6 219 58.9
HPP92_018248 Vanilla planifolia HOM05D007678 ORTHO05D009658 1.1e-57 227.6 212 55.2
Nitab4.5_0008005g0010 Nicotiana tabacum HOM05D007678 ORTHO05D009658 3.2e-57 226.1 182 64.3
TPR.G4277 Trifolium pratense HOM05D007678 ORTHO05D009658 7.1e-57 224.9 140 85.7
Nitab4.5_0000062g0570 Nicotiana tabacum HOM05D007678 ORTHO05D009658 6.7e-55 218.4 191 60.2
AUR62031676 Chenopodium quinoa HOM05D007678 ORTHO05D009658 3.3e-54 216.1 167 65.9
arahy.Tifrunner.gnm1.ann1.L3S1G4 Arachis hypogaea HOM05D007678 ORTHO05D009658 4.3e-54 215.7 212 60.4
Zm00001eb303400 Zea mays HOM05D007678 ORTHO05D009658 4.3e-54 215.7 203 56.2
CsaV3_5G029470 Cucumis sativus L. HOM05D007678 ORTHO05D000003 7.4e-54 214.9 162 69.8
Rhsim01G0121700 Rhododendron simsii HOM05D007678 ORTHO05D009658 1.2e-48 197.6 147 68.0
Phvul.008G043200 Phaseolus vulgaris HOM05D007678 ORTHO05D009658 2.8e-45 186.4 140 72.9
CBR_g30334 Chara braunii HOM05D007678 ORTHO05D009658 4.8e-45 185.7 227 42.3
Mapoly0003s0067 Marchantia polymorpha HOM05D007678 ORTHO05D009658 1.2e-43 181.0 204 42.2
Pp3c18_7980 Physcomitrium patens HOM05D007678 ORTHO05D009658 1.7e-42 177.2 206 42.2
TPR.G8973 Trifolium pratense HOM05D007678 ORTHO05D009658 2.9e-42 176.4 99 90.9
SMO174G0167 Selaginella moellendorffii HOM05D007678 ORTHO05D009658 4.6e-40 169.1 183 45.9
CANSAT56G0191 Cannabis sativa HOM05D007678 ORTHO05D009658 8.7e-39 164.9 128 67.2
Cc06_g20600 Coffea canephora HOM05D007678 ORTHO05D009658 5.7e-38 162.2 134 63.4
QL04p021970 Quercus lobata HOM05D007678 ORTHO05D009658 8.2e-37 158.3 108 75.0
arahy.Tifrunner.gnm1.ann1.1DGF2A Arachis hypogaea HOM05D007678 ORTHO05D009658 1.3e-34 151.0 94 78.7
Cpa.g.sc33.162 Carica papaya HOM05D007678 ORTHO05D009658 1.1e-33 147.9 106 75.5
Lsat_1_v5_gn_5_155661 Lactuca sativa HOM05D007678 ORTHO05D009658 1.1e-30 137.9 191 44.5
arahy.Tifrunner.gnm1.ann1.6E2HM0 Arachis hypogaea HOM05D007678 ORTHO05D009658 3.2e-25 119.8 78 76.9
Cc06_g20610 Coffea canephora HOM05D007678 ORTHO05D009658 2.0e-22 110.5 85 62.4
PRCOL_00006709 Prasinoderma coloniale HOM05D007678 ORTHO05D009658 2.0e-22 110.5 200 32.0
GSVIVG01012452001 Vitis vinifera HOM05D007678 ORTHO05D009658 1.7e-21 107.5 80 68.8
MCO01G505 Micromonas commoda HOM05D007678 ORTHO05D009658 4.5e-19 99.4 213 28.2
CSS0047660 Camellia sinensis var. sinensis HOM05D007678 ORTHO05D009658 8.5e-18 95.1 60 78.3
arahy.Tifrunner.gnm1.ann1.78M82M Arachis hypogaea HOM05D007678 ORTHO05D009658 3.2e-17 93.2 64 73.4
QL04p021975 Quercus lobata HOM05D007678 ORTHO05D009658 2.2e-13 80.5 58 69.0
arahy.Tifrunner.gnm1.ann1.NH3ZAS Arachis hypogaea HOM05D007678 ORTHO05D009658 5.3e-12 75.9 69 71.0
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 9.1e-12 75.1 46 80.4
arahy.Tifrunner.gnm1.ann1.BX3238 Arachis hypogaea HOM05D007678 ORTHO05D009658 1.7e-10 70.9 87 54.0
QL02p047964 Quercus lobata HOM05D007678 ORTHO05D009658 8.5e-10 68.6 56 66.1
FAN03G1326 Fragaria x ananassa HOM05D001392 ORTHO05D006407 1.1e-09 68.2 65 60.0
TPR.G4281 Trifolium pratense HOM05D007678 ORTHO05D009658 1.5e-09 67.8 36 91.7
arahy.Tifrunner.gnm1.ann1.MMNX5U Arachis hypogaea HOM05D000747 ORTHO05D009658 4.7e-08 62.8 52 71.2
Os07g0222900 Oryza sativa ssp. japonica HOM05D007678 ORTHO05D009658 8.0e-08 62.0 57 54.4
QL02p047905 Quercus lobata HOM05D007678 ORTHO05D009658 1.5e-06 57.8 63 49.2


User provided reference genes

Program Settings