Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 4.7e-190 667.9 393 100.0
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 5.2e-165 584.7 397 85.9
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 2.6e-164 582.4 397 85.9
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 5.6e-159 564.7 402 84.3
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 1.1e-154 550.4 395 80.5
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 1.9e-151 539.7 332 87.0
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 4.3e-151 538.5 337 83.7
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 4.3e-151 538.5 335 84.5
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 1.6e-150 536.6 333 86.2
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 8.1e-150 534.3 396 82.1
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 9.9e-148 527.3 397 73.3
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 2.9e-147 525.8 444 73.2
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 8.4e-139 497.7 314 83.1
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 1.3e-123 447.2 327 72.2
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 1.1e-122 444.1 325 72.3
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 3.2e-122 442.6 324 71.3
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 1.3e-120 437.2 330 71.8
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 1.8e-120 436.8 340 69.7
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.3e-120 436.4 335 71.3
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 1.5e-119 433.7 319 71.2
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 4.3e-119 432.2 325 70.5
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 4.3e-119 432.2 325 69.8
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 7.4e-119 431.4 330 69.7
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 2.1e-118 429.9 326 69.3
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 8.2e-118 427.9 316 70.9
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 8.2e-118 427.9 332 67.5
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.4e-117 427.2 347 67.4
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 3.1e-117 426.0 328 68.6
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 5.3e-117 425.2 325 70.5
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 1.5e-116 423.7 336 66.7
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 2.6e-116 422.9 330 68.5
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 4.5e-116 422.2 361 62.9
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 2.9e-115 419.5 331 68.0
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 3.8e-115 419.1 336 65.8
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 1.1e-114 417.5 337 66.5
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 5.5e-114 415.2 332 65.4
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 1.2e-113 414.1 313 70.3
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 1.0e-112 411.0 335 65.7
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 1.3e-112 410.6 327 66.4
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 2.3e-112 409.8 345 65.5
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 3.0e-112 409.5 324 66.0
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 5.1e-112 408.7 320 66.9
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 6.7e-112 408.3 332 64.8
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 1.1e-111 407.5 333 64.3
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 5.7e-111 405.2 320 68.8
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 4.8e-110 402.1 331 66.2
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 6.3e-110 401.7 337 63.8
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 1.4e-109 400.6 340 63.2
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 1.8e-109 400.2 339 64.0
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 2.4e-109 399.8 329 64.4
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 4.1e-109 399.1 331 64.7
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 4.1e-109 399.1 336 65.5
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 9.1e-109 397.9 324 64.8
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 9.1e-109 397.9 320 65.9
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 1.2e-108 397.5 350 61.7
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 1.2e-108 397.5 338 63.6
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 1.5e-108 397.1 334 64.1
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 1.5e-108 397.1 328 64.9
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 2.0e-108 396.7 329 64.1
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 2.6e-108 396.4 333 64.0
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 4.5e-108 395.6 325 64.3
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 4.5e-108 395.6 325 64.3
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 1.3e-107 394.0 338 62.4
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 1.7e-107 393.7 329 63.5
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 3.8e-107 392.5 323 64.7
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 5.0e-107 392.1 323 64.7
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 5.0e-107 392.1 320 65.0
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 5.0e-107 392.1 354 60.7
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 6.5e-107 391.7 327 63.0
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 6.5e-107 391.7 398 61.1
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 8.5e-107 391.3 398 61.3
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 2.5e-106 389.8 327 63.3
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 3.2e-106 389.4 331 64.0
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 9.4e-106 387.9 320 64.1
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 1.2e-105 387.5 318 63.8
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 1.2e-105 387.5 330 62.4
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 1.6e-105 387.1 324 63.6
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 1.6e-105 387.1 333 63.4
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 2.1e-105 386.7 332 60.5
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.1e-105 386.7 335 61.8
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 4.6e-105 385.6 326 62.6
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 7.9e-105 384.8 324 65.4
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 3.9e-104 382.5 321 66.0
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 5.1e-104 382.1 327 63.0
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 6.7e-104 381.7 321 66.0
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 5.7e-103 378.6 372 56.7
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 1.7e-102 377.1 288 69.4
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 2.2e-102 376.7 312 64.1
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 2.8e-102 376.3 301 65.8
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 2.8e-102 376.3 290 67.6
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 4.8e-102 375.6 339 59.3
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 1.1e-101 374.4 345 61.2
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 3.1e-101 372.9 326 62.9
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 1.3e-99 367.5 340 59.1
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 4.2e-98 362.5 293 65.2
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 6.1e-97 358.6 287 65.9
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 5.2e-96 355.5 330 56.7
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 4.4e-95 352.4 286 65.7
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 7.4e-95 351.7 339 59.0
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 4.8e-94 349.0 332 57.8
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 4.1e-93 345.9 288 64.9
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 7.0e-93 345.1 445 47.2
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 1.1e-90 337.8 343 57.1
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 1.5e-90 337.4 309 60.2
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 4.7e-89 332.4 323 57.9
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 1.7e-86 323.9 295 58.6
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 3.7e-86 322.8 339 53.7
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 7.0e-85 318.5 296 58.4
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 1.0e-83 314.7 307 57.3
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.2e-82 309.7 311 56.9
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.2e-76 291.2 288 58.7
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.0e-72 278.1 225 66.2
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 2.9e-62 243.4 347 41.2
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 2.9e-62 243.4 217 61.3
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 2.1e-57 227.3 215 59.1
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 6.8e-56 222.2 326 41.7
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 8.3e-54 215.3 310 47.4
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 5.6e-50 202.6 213 58.7
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 6.2e-49 199.1 138 73.9
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 7.1e-45 185.7 155 65.8
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.0e-39 167.5 156 59.0
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 2.6e-39 167.2 112 77.7
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 4.9e-38 162.9 264 38.3
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 6.4e-38 162.5 147 58.5
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 1.1e-37 161.8 382 32.7
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 4.1e-37 159.8 160 55.0
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.1e-36 157.5 115 69.6
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 9.6e-34 148.7 338 32.5
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 8.1e-33 145.6 215 46.0
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 1.1e-26 125.2 175 46.3
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 1.1e-26 125.2 98 63.3
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 1.5e-23 114.8 88 68.2
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.6e-23 114.0 69 84.1
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 1.9e-21 107.8 170 39.4
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 1.2e-20 105.1 63 85.7
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 6.0e-20 102.8 61 82.0
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.3e-19 100.9 135 48.9
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 3.9e-19 100.1 106 53.8
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 8.7e-19 99.0 78 66.7
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 1.5e-18 98.2 135 45.9
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 1.5e-18 98.2 63 74.6
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 1.9e-18 97.8 57 84.2
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 3.7e-17 93.6 166 37.3
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 8.1e-17 92.4 63 69.8
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 6.9e-16 89.4 114 45.6
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 1.2e-15 88.6 68 67.6
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 1.7e-14 84.7 66 71.2
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 3.2e-13 80.5 336 25.6
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.5e-13 79.7 91 52.7
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 4.3e-10 70.1 323 26.6
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 2.8e-09 67.4 110 43.6
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 8.2e-09 65.9 33 93.9
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 9.0e-08 62.4 118 32.2
SEGI_13080 Sequoiadendron giganteum HOM05D026866 ORTHO05D005197 1.7e-06 58.2 44 65.9
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 2.2e-06 57.8 60 50.0


User provided reference genes

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