Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 6.8e-134 480.7 250 100.0
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 1.1e-120 436.8 250 89.2
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 1.1e-120 436.8 250 89.2
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 3.3e-120 435.3 248 89.9
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 3.9e-113 411.8 257 85.6
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 6.4e-100 367.9 245 77.1
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 4.3e-96 355.1 246 72.4
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 4.3e-96 355.1 246 72.4
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 3.6e-95 352.1 234 74.8
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 8.1e-95 350.9 233 74.2
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 1.5e-93 346.7 245 71.0
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 5.1e-89 331.6 236 72.9
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 1.4e-86 323.6 246 65.4
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 2.4e-86 322.8 226 72.1
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 4.0e-86 322.0 253 64.8
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 1.5e-85 320.1 244 65.2
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 3.4e-85 318.9 245 65.3
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 3.4e-85 318.9 268 61.9
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 5.8e-85 318.2 246 64.2
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 4.9e-84 315.1 211 71.1
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 1.4e-83 313.5 239 64.4
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 1.4e-83 313.5 244 63.1
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 1.4e-83 313.5 236 65.7
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 1.9e-83 313.2 254 62.6
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 1.9e-83 313.2 242 63.6
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 2.4e-83 312.8 240 65.0
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 3.2e-83 312.4 242 64.9
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 3.2e-83 312.4 251 63.7
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 4.2e-83 312.0 246 65.0
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 5.4e-83 311.6 243 63.8
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 7.1e-83 311.2 237 65.0
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 7.1e-83 311.2 256 61.7
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 7.1e-83 311.2 227 66.5
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 2.1e-82 309.7 239 66.5
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 2.7e-82 309.3 249 61.0
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.7e-82 309.3 230 65.7
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 2.7e-82 309.3 240 63.3
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 2.7e-82 309.3 248 63.3
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 3.5e-82 308.9 248 61.7
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 4.6e-82 308.5 249 61.0
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 4.6e-82 308.5 237 63.3
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 4.6e-82 308.5 242 62.4
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 6.0e-82 308.1 240 62.9
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 6.0e-82 308.1 240 62.9
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 7.8e-82 307.8 231 64.9
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 7.8e-82 307.8 237 64.6
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 7.8e-82 307.8 246 63.4
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 1.0e-81 307.4 248 61.7
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 1.3e-81 307.0 249 61.8
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 1.7e-81 306.6 250 62.4
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 1.7e-81 306.6 253 62.1
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 2.3e-81 306.2 252 62.3
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 3.0e-81 305.8 251 61.0
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 5.1e-81 305.1 245 62.9
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 6.6e-81 304.7 235 63.4
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 6.6e-81 304.7 233 65.2
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 8.7e-81 304.3 243 61.7
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 1.5e-80 303.5 234 65.0
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 1.5e-80 303.5 246 63.8
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 1.5e-80 303.5 209 67.9
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 1.9e-80 303.1 253 61.7
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 1.9e-80 303.1 247 63.2
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 4.3e-80 302.0 238 63.0
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 7.3e-80 301.2 235 63.4
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 9.6e-80 300.8 222 68.0
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 1.3e-79 300.4 225 68.9
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 2.1e-79 299.7 238 64.3
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 2.1e-79 299.7 247 64.0
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 4.8e-79 298.5 246 60.2
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 6.2e-79 298.1 235 63.0
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 8.1e-79 297.7 235 63.8
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 2.4e-78 296.2 242 60.7
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 2.4e-78 296.2 235 61.3
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 3.1e-78 295.8 235 60.9
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 9.0e-78 294.3 225 68.4
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 1.5e-77 293.5 208 67.3
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 3.4e-77 292.4 242 59.9
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 4.5e-77 292.0 235 60.9
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 5.8e-77 291.6 242 59.5
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 5.8e-77 291.6 224 65.6
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 7.6e-77 291.2 242 59.9
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 7.6e-77 291.2 235 61.3
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 1.3e-76 290.4 243 57.6
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 2.9e-76 289.3 259 57.5
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 3.8e-76 288.9 202 65.3
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 8.4e-76 287.7 241 60.6
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 2.4e-75 286.2 205 68.3
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 9.3e-75 284.3 246 57.7
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 6.0e-74 281.6 210 65.2
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 1.8e-73 280.0 221 63.3
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 5.1e-73 278.5 205 63.9
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 4.0e-70 268.9 234 59.4
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 4.5e-69 265.4 203 65.0
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 1.7e-68 263.5 207 63.8
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 4.3e-64 248.8 393 39.4
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 9.0e-62 241.1 186 63.4
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 4.5e-61 238.8 252 51.6
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 7.1e-59 231.5 224 52.2
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 8.7e-57 224.6 221 53.8
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.6e-55 220.3 190 58.9
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 2.1e-55 219.9 240 51.7
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 4.8e-55 218.8 199 55.3
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 6.1e-50 201.8 171 63.7
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 5.5e-43 178.7 236 43.2
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 1.7e-39 167.2 139 59.0
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 9.7e-32 141.4 111 60.4
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 3.7e-31 139.4 98 65.3
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 3.8e-28 129.4 100 59.0
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 7.5e-24 115.2 79 75.9
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 2.9e-20 103.2 190 37.4
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 2.6e-08 63.5 153 30.7
HanXRQChr01g0002331 Helianthus annuus HOM05D001530 ORTHO05D003676 1.3e-07 61.2 222 25.7
Os07g0655900 Oryza sativa ssp. japonica HOM05D001530 ORTHO05D003676 6.3e-07 58.9 237 27.0
Lalb_Chr13g0304101 Lupinus albus HOM05D001530 ORTHO05D003676 8.3e-07 58.5 238 24.8
Cre01.g043050 Chlamydomonas reinhardtii HOM05D005243 ORTHO05D006670 2.4e-06 57.0 153 30.7
Duzib138G1359 Durio zibethinus HOM05D001530 ORTHO05D003676 3.1e-06 56.6 222 25.2
Lsat_1_v5_gn_5_187301 Lactuca sativa HOM05D001530 ORTHO05D003676 5.4e-06 55.8 222 25.7
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 7.0e-06 55.5 152 25.7
Psat1g183600 Pisum sativum HOM05D001530 ORTHO05D003676 7.0e-06 55.5 242 24.0


User provided reference genes

Program Settings