Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 0.0e+00 2674.8 1369 100.0
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2015.7 1377 78.6
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1968.7 1382 76.8
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 1906.0 1422 73.3
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 1869.0 1423 71.8
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 1801.6 1424 70.2
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 1784.6 1382 71.4
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 1708.7 1436 66.2
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 1708.7 1436 66.2
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 1673.7 1427 65.6
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1321.6 1465 52.6
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 1307.7 974 72.3
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 1305.0 1436 52.5
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 1303.9 1431 53.1
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 1298.5 1391 54.3
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 1280.4 1414 52.3
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 1271.9 1353 53.9
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 1269.2 1434 53.0
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 1264.2 1428 51.2
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 1249.2 1384 53.0
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 1248.0 1432 51.0
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 1246.5 1425 51.2
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 1241.9 1382 52.7
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 1241.5 1381 52.8
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 1241.1 1382 52.5
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 1237.6 1362 53.3
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 1230.7 1389 52.3
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 1229.5 1445 51.7
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 1224.2 1350 53.0
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 1222.2 1416 51.3
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 1221.8 1394 51.1
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 1219.1 1421 51.4
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 1218.8 1452 50.0
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1183.7 1472 48.3
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 1157.1 1404 49.1
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 1145.6 1362 50.2
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 1130.9 1326 50.5
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 1126.3 1216 53.9
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 1125.5 1389 49.7
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 1123.2 1407 48.7
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 1116.7 1475 46.4
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 1112.4 1475 46.4
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1110.9 1410 48.4
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 1104.7 1395 48.0
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 1102.0 1480 46.3
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 1099.7 1481 46.1
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 1092.4 1417 47.1
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 1091.6 1405 47.2
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 1090.1 1451 46.2
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 1084.3 1427 46.6
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 1082.0 1362 48.0
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 1081.6 1355 47.4
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 1080.9 1477 46.1
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 1077.0 1464 45.8
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 1.9e-311 1072.8 1334 48.1
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 6.6e-311 1071.2 1378 47.2
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 1.1e-310 1070.5 1287 49.4
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 2.4e-310 1069.3 1362 47.0
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 7.8e-309 1064.3 1351 47.5
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 8.7e-308 1060.8 1364 47.7
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 1.1e-307 1060.4 1399 46.5
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 1.5e-307 1060.1 1332 48.0
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 4.3e-307 1058.5 1466 45.8
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 1.3e-306 1057.0 1372 47.5
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 2.4e-305 1052.7 1347 47.5
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 9.3e-302 1040.8 1348 46.8
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 1.6e-301 1040.0 1419 46.0
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 2.1e-298 1029.6 1429 45.5
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 1.1e-297 1027.3 1433 44.1
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 9.9e-296 1020.8 1422 44.9
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 2.9e-295 1019.2 1394 45.9
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 2.9e-295 1019.2 1407 45.0
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 3.8e-295 1018.8 1435 44.9
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 2.6e-288 996.1 1459 43.4
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 1.1e-283 980.7 1391 44.4
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 1.3e-276 957.2 955 56.1
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 8.2e-274 948.0 1380 43.3
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 3.0e-260 902.9 1408 42.7
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 7.5e-243 845.1 772 60.6
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 1.7e-234 817.4 994 48.5
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 2.0e-219 767.3 1359 38.5
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 2.9e-218 763.5 1334 39.2
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 4.6e-216 756.1 529 76.2
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 1.2e-208 731.5 1279 38.5
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 2.7e-208 730.3 1324 38.0
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.3e-202 711.4 992 43.0
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 6.2e-189 666.0 1254 37.4
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 1.2e-179 635.2 1261 34.4
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 5.5e-169 599.7 841 43.6
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 1.6e-168 598.2 1349 34.2
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 1.1e-166 592.0 635 54.6
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 3.8e-162 577.0 919 40.7
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 8.2e-157 559.3 1346 31.1
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 1.7e-149 535.0 1305 32.6
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 3.1e-148 530.8 799 41.3
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 2.5e-145 521.2 769 42.4
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 3.8e-130 470.7 422 61.4
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 3.8e-122 444.1 1267 30.4
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 9.5e-105 386.3 430 55.6
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 8.9e-79 300.1 325 53.2
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 3.0e-74 285.0 545 37.6
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.1e-68 266.5 305 50.5
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 6.0e-67 260.8 842 28.3
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 1.4e-60 239.6 532 31.2
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 5.5e-60 237.7 235 58.7
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 6.9e-55 220.7 459 33.8
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.2e-37 162.5 110 75.5
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 1.4e-36 159.8 149 62.4
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 1.4e-36 159.8 149 62.4
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 1.4e-36 159.8 149 62.4
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 3.2e-36 158.7 179 55.9
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 1.1e-33 150.2 147 56.5
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 1.7e-32 146.4 528 28.0
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 7.7e-30 137.5 195 42.1
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 5.0e-29 134.8 333 34.8
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 6.1e-27 127.9 98 71.4
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 1.1e-25 123.6 190 45.3
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 1.7e-24 119.8 116 59.5
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 6.3e-24 117.9 152 46.1
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 1.6e-22 113.2 178 40.4
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 3.5e-22 112.1 168 43.5
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 1.3e-21 110.2 465 22.6
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 1.9e-20 106.3 70 72.9
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.5e-20 105.9 67 79.1
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 9.4e-20 104.0 484 24.6
Psat7g052720 Pisum sativum HOM05D004625 ORTHO05D006054 1.2e-17 97.1 64 73.4
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.6e-17 95.9 52 84.6
Psat7g052560 Pisum sativum HOM05D004625 ORTHO05D006054 3.7e-16 92.0 63 71.4
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 1.6e-14 86.7 246 30.5
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.8e-13 82.0 61 67.2
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 5.0e-13 81.6 54 77.8
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 6.5e-13 81.3 57 73.7
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 8.5e-13 80.9 153 37.3
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 7.2e-12 77.8 67 56.7
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 9.4e-12 77.4 100 52.0
arahy.Tifrunner.gnm1.ann1.5G22ZR Arachis hypogaea HOM05D021257 ORTHO05D004161 9.4e-12 77.4 84 48.8
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 2.1e-11 76.3 67 62.7
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 2.3e-10 72.8 68 58.8
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 2.8e-08 65.9 57 68.4


User provided reference genes

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