Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 3.7e-137 491.5 243 100.0
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 6.2e-116 421.0 243 86.4
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.1e-115 420.2 243 86.8
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 6.8e-115 417.5 243 85.6
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 8.7e-102 374.0 243 78.2
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.7e-97 359.8 244 77.5
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 8.4e-97 357.5 244 76.2
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.3e-93 345.1 251 73.7
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 9.6e-93 344.0 247 71.3
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 9.6e-93 344.0 247 71.3
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.6e-92 343.2 251 72.5
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.0e-90 336.3 251 73.3
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 2.1e-84 316.2 249 69.5
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 2.8e-84 315.8 252 68.7
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 3.8e-81 305.4 244 65.2
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 9.3e-80 300.8 244 65.6
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 4.6e-79 298.5 240 65.4
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 3.3e-77 292.4 248 62.9
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 2.1e-76 289.7 248 58.9
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 6.2e-76 288.1 243 63.8
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 2.6e-74 282.7 242 60.7
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 2.6e-74 282.7 222 63.1
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 4.5e-74 282.0 240 60.0
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 5.8e-74 281.6 248 56.9
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 1.3e-73 280.4 237 60.8
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 2.9e-73 279.3 249 57.0
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 4.9e-73 278.5 238 60.9
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.1e-72 277.3 235 59.6
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 3.2e-72 275.8 248 58.1
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 2.1e-71 273.1 241 58.9
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 2.7e-71 272.7 239 59.0
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 2.7e-71 272.7 211 63.5
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 2.7e-71 272.7 239 58.6
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.7e-71 272.7 211 63.0
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 4.6e-71 271.9 202 64.4
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 7.9e-71 271.2 246 56.1
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 3.9e-70 268.9 187 72.7
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 5.1e-70 268.5 248 56.0
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 8.7e-70 267.7 183 69.4
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.5e-69 266.9 243 56.8
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 1.9e-69 266.5 240 62.1
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.9e-69 266.5 212 61.8
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 4.3e-69 265.4 241 60.6
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 9.7e-69 264.2 245 55.1
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.2e-68 263.1 248 55.2
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.8e-68 262.7 245 55.1
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.8e-68 262.7 211 62.6
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 3.7e-68 262.3 223 59.2
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 8.2e-68 261.2 245 54.7
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 3.1e-67 259.2 231 58.4
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 5.3e-67 258.5 241 56.8
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 2.0e-66 256.5 232 56.9
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 4.5e-66 255.4 205 59.5
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 2.2e-65 253.1 178 67.4
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 2.2e-65 253.1 178 67.4
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 2.2e-65 253.1 181 68.0
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.1e-64 250.8 239 54.4
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.1e-64 250.8 181 68.0
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 1.4e-64 250.4 236 56.4
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 2.5e-64 249.6 237 53.2
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 4.2e-64 248.8 178 65.2
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.2e-64 248.8 203 58.6
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 5.5e-64 248.4 181 66.3
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 5.5e-64 248.4 181 66.3
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 5.5e-64 248.4 181 66.3
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.2e-63 247.3 207 58.0
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.6e-63 246.9 207 57.0
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.1e-63 246.5 210 59.5
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 2.7e-63 246.1 185 64.9
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 2.7e-63 246.1 242 52.1
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 3.6e-63 245.7 243 54.3
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 4.6e-63 245.4 207 58.0
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.6e-63 245.4 207 57.5
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 6.1e-63 245.0 197 62.4
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 6.1e-63 245.0 237 54.0
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 7.9e-63 244.6 197 60.4
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 1.0e-62 244.2 205 59.0
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 5.1e-62 241.9 201 59.7
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 6.7e-62 241.5 244 51.2
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 8.8e-62 241.1 205 57.6
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 8.8e-62 241.1 176 65.3
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.1e-61 240.7 242 53.3
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.0e-61 240.0 178 68.0
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 2.5e-61 239.6 251 50.6
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 2.5e-61 239.6 211 55.9
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 4.3e-61 238.8 180 66.7
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 7.4e-61 238.0 242 51.2
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.3e-60 237.3 220 57.3
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.7e-60 236.9 144 80.6
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.2e-60 236.5 236 51.7
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.8e-60 236.1 246 50.8
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 3.7e-60 235.7 180 66.1
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 3.1e-59 232.6 178 62.4
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.0e-58 229.9 149 73.8
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.6e-58 229.6 149 73.2
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.2e-57 226.5 234 50.0
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.2e-57 226.5 207 52.7
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.1e-56 224.2 174 64.4
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 2.5e-56 223.0 175 62.3
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 4.2e-56 222.2 224 50.9
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 4.2e-56 222.2 208 54.3
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 5.5e-56 221.9 162 66.0
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 2.1e-55 219.9 148 72.3
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.7e-55 219.5 240 50.4
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 3.6e-55 219.2 183 56.8
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 4.7e-55 218.8 236 51.3
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 5.1e-54 215.3 145 68.3
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.1e-53 214.2 134 76.1
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.6e-53 213.0 158 66.5
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.6e-53 213.0 164 65.2
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 3.7e-52 209.1 188 58.0
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.8e-52 208.8 145 68.3
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 4.8e-52 208.8 201 61.2
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 6.3e-52 208.4 141 70.2
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.4e-51 206.5 129 78.3
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.2e-50 204.1 139 69.1
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.6e-50 203.0 191 52.9
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.5e-50 202.6 183 53.0
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 4.5e-50 202.2 139 67.6
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 7.7e-50 201.4 163 66.9
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.7e-49 200.3 162 58.6
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 2.9e-49 199.5 230 45.7
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 6.5e-49 198.4 171 53.8
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 8.5e-49 198.0 184 56.0
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.2e-47 194.1 149 60.4
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 6.1e-47 191.8 200 54.5
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.2e-44 183.3 183 51.4
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.7e-44 182.6 185 49.7
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.4e-43 180.6 199 51.3
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 4.5e-42 175.6 205 46.8
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 5.9e-42 175.3 174 52.9
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 5.0e-41 172.2 149 55.0
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 2.7e-39 166.4 195 43.1
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 3.6e-39 166.0 139 54.0
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 8.0e-39 164.9 167 51.5
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 8.8e-38 161.4 184 47.8
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.5e-37 160.6 174 55.2
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.7e-36 157.1 170 50.6
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-35 154.1 198 41.9
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.2e-34 151.0 144 58.3
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.3e-33 147.5 172 48.8
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.6e-31 140.6 141 54.6
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 6.3e-28 128.6 125 51.2
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 2.4e-27 126.7 159 47.8
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 9.2e-19 98.2 79 58.2
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 4.5e-18 95.9 162 34.6
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.3e-17 93.6 146 38.4
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 3.6e-15 86.3 131 35.1
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 3.4e-13 79.7 83 56.6
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.2e-12 77.0 150 30.7
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.4e-11 73.6 133 33.8
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.2e-11 71.6 82 42.7
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.0e-09 68.2 155 31.0
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 6.6e-09 65.5 124 26.6
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 3.3e-08 63.2 114 31.6
QL02p051406 Quercus lobata HOM05D004693 ORTHO05D005545 2.8e-07 60.1 87 35.6
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.6e-07 59.7 80 42.5
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 1.8e-06 57.4 59 54.2


User provided reference genes

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