Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04047_v3 Cicer arietinum L. HOM05D007627 ORTHO05D009640 1.2e-43 179.5 95 100.0
Medtr7g007290 Medicago truncatula HOM05D007627 ORTHO05D009640 1.6e-35 152.5 95 86.3
TPR.G35989 Trifolium pratense HOM05D007627 ORTHO05D009640 3.0e-34 148.3 95 85.3
Psat3g205400 Pisum sativum HOM05D007627 ORTHO05D009640 2.8e-32 141.7 95 80.0
Lj1g0016177 Lotus japonicus HOM05D007627 ORTHO05D009640 1.4e-26 122.9 95 72.6
Lalb_Chr04g0257421 Lupinus albus HOM05D007627 ORTHO05D009640 3.0e-26 121.7 95 71.6
Lalb_Chr10g0091241 Lupinus albus HOM05D007627 ORTHO05D009640 5.2e-26 120.9 95 71.6
Glyma.18G296500 Glycine max HOM05D007627 ORTHO05D009640 9.7e-25 116.7 95 71.6
Atru.chr5.1007 Acer truncatum HOM05D007627 ORTHO05D009640 3.7e-24 114.8 95 67.4
Ciclev10023058m.g Citrus clementina HOM05D007627 ORTHO05D009640 7.0e-23 110.5 95 62.1
Phvul.008G006000 Phaseolus vulgaris HOM05D007627 ORTHO05D009640 9.1e-23 110.2 98 65.3
Manes.05G003000 Manihot esculenta HOM05D007627 ORTHO05D009640 5.9e-22 107.5 95 58.9
Medtr7g007300 Medicago truncatula HOM05D000007 ORTHO05D000017 7.7e-22 107.1 70 78.6
Actinidia21001 Actinidia chinensis HOM05D007627 ORTHO05D009640 1.0e-21 106.7 92 62.0
Sed0009470 Sechium edule HOM05D007627 ORTHO05D009640 1.3e-21 106.3 95 60.0
VMungo1383G2294 Vigna mungo HOM05D007627 ORTHO05D009640 1.3e-21 106.3 97 66.0
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 3.8e-21 104.8 81 74.1
RcHm_v2.0_Chr7g0241611 Rosa chinensis HOM05D007627 ORTHO05D009640 3.8e-21 104.8 95 62.1
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 5.0e-21 104.4 92 62.0
CiPaw.07G117000 Carya illinoinensis HOM05D007627 ORTHO05D009640 8.5e-21 103.6 95 64.2
QL02p088799 Quercus lobata HOM05D007627 ORTHO05D009640 1.5e-20 102.8 94 63.8
MELO3C010153.2 Cucumis melo HOM05D007627 ORTHO05D009640 8.0e-19 97.1 84 60.7
Haze_05035 Corylus avellana HOM05D007627 ORTHO05D009640 1.0e-18 96.7 85 67.1
Thecc.01G312700 Theobroma cacao HOM05D007627 ORTHO05D009640 1.0e-18 96.7 84 63.1
COL.COLO4_23238 Corchorus olitorius HOM05D007627 ORTHO05D009640 1.8e-18 95.9 84 54.8
MD03G1295800 Malus domestica HOM05D007627 ORTHO05D009640 1.8e-18 95.9 95 57.9
Sc17g0000480 Simmondsia chinensis HOM05D007627 ORTHO05D009640 2.3e-18 95.5 92 59.8
ClCG10G011370 Citrullus lanatus HOM05D007627 ORTHO05D009640 3.0e-18 95.1 95 51.6
Dinv10091 Davidia involucrata HOM05D007627 ORTHO05D009640 3.0e-18 95.1 76 64.5
Cfa005805 Carpinus fangiana HOM05D007627 ORTHO05D009640 4.0e-18 94.7 85 63.5
CsaV3_1G045260 Cucumis sativus L. HOM05D007627 ORTHO05D009640 4.0e-18 94.7 84 59.5
Actinidia25845 Actinidia chinensis HOM05D007627 ORTHO05D009640 5.2e-18 94.4 92 56.5
CANSAT78G1399 Cannabis sativa HOM05D007627 ORTHO05D009640 5.2e-18 94.4 96 59.4
QL12p020023 Quercus lobata HOM05D007627 ORTHO05D009640 6.8e-18 94.0 94 59.6
Aa31LG2G19210 Aethionema arabicum HOM05D007627 ORTHO05D009640 1.2e-17 93.2 92 56.5
Potri.014G121300 Populus trichocarpa HOM05D007627 ORTHO05D009640 1.5e-17 92.8 92 53.3
Solyc01g097360.4 Solanum lycopersicum HOM05D007627 ORTHO05D009640 1.5e-17 92.8 90 61.1
Thhalv10011898m.g Eutrema salsugineum HOM05D007627 ORTHO05D009640 2.0e-17 92.4 92 54.3
Prupe.8G271600 Prunus persica HOM05D007627 ORTHO05D009640 2.0e-17 92.4 95 56.8
Rhsim01G0290400 Rhododendron simsii HOM05D007627 ORTHO05D009640 2.0e-17 92.4 92 57.6
Eucgr.H01048 Eucalyptus grandis HOM05D007627 ORTHO05D009640 2.6e-17 92.0 86 60.5
Hma1.2p1_0212F.1_g089970 Hydrangea macrophylla HOM05D007627 ORTHO05D009640 2.6e-17 92.0 81 61.7
CSS0016321 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 3.4e-17 91.7 93 54.8
BcaC08g42976 Brassica carinata HOM05D007627 ORTHO05D009640 4.4e-17 91.3 93 58.1
CSS0031687 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 4.4e-17 91.3 93 55.9
CAN.G134.101 Capsicum annuum HOM05D007627 ORTHO05D009640 4.4e-17 91.3 92 58.7
Cfa005807 Carpinus fangiana HOM05D007627 ORTHO05D009640 4.4e-17 91.3 85 61.2
Sopen01g041030 Solanum pennellii HOM05D007627 ORTHO05D009640 5.7e-17 90.9 90 60.0
FAN16G0578 Fragaria x ananassa HOM05D007627 ORTHO05D009640 9.8e-17 90.1 96 58.3
Nitab4.5_0001592g0100 Nicotiana tabacum HOM05D007627 ORTHO05D009640 9.8e-17 90.1 92 57.6
TAR381G1624 Trochodendron aralioides HOM05D007627 ORTHO05D009640 9.8e-17 90.1 92 57.6
Gohir.D11G114900 Gossypium hirsutum HOM05D007627 ORTHO05D009640 1.3e-16 89.7 84 56.0
Gorai.007G123100 Gossypium raimondii HOM05D007627 ORTHO05D009640 1.3e-16 89.7 84 56.0
BcaB07g33814 Brassica carinata HOM05D007627 ORTHO05D009640 2.2e-16 89.0 93 57.0
Duzib192G0243 Durio zibethinus HOM05D007627 ORTHO05D009640 3.7e-16 88.2 86 58.1
Nitab4.5_0012228g0040 Nicotiana tabacum HOM05D007627 ORTHO05D009640 4.8e-16 87.8 92 56.5
Gohir.A11G109700 Gossypium hirsutum HOM05D007627 ORTHO05D009640 6.3e-16 87.4 84 54.8
FAN25G0556 Fragaria x ananassa HOM05D007627 ORTHO05D009640 1.1e-15 86.7 96 57.3
Sabra14G0090000 Salix brachista HOM05D007627 ORTHO05D009640 1.1e-15 86.7 83 56.6
FvH4_3g25590 Fragaria vesca HOM05D007627 ORTHO05D009640 1.4e-15 86.3 96 57.3
FAN11G3818 Fragaria x ananassa HOM05D007627 ORTHO05D009640 1.4e-15 86.3 96 57.3
CARHR037420 Cardamine hirsuta HOM05D007627 ORTHO05D009640 1.8e-15 85.9 93 53.8
Oeu038438.1 Olea europaea HOM05D007627 ORTHO05D009640 1.8e-15 85.9 89 57.3
FAN21G2770 Fragaria x ananassa HOM05D007627 ORTHO05D009640 2.4e-15 85.5 96 56.2
Peaxi162Scf00282g00336 Petunia axillaris HOM05D007627 ORTHO05D009640 4.1e-15 84.7 81 60.5
MSTRG.21216 Avicennia marina HOM05D007627 ORTHO05D009640 2.0e-14 82.4 88 53.4
PGR119G1365 Punica granatum HOM05D007627 ORTHO05D009640 2.0e-14 82.4 85 58.8
Cpa.g.sc18.36 Carica papaya HOM05D007627 ORTHO05D009640 1.0e-13 80.1 87 48.3
Cc02_g30590 Coffea canephora HOM05D007627 ORTHO05D009640 1.0e-13 80.1 90 54.4
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 1.0e-13 80.1 88 52.3
Sp1g34810 Schrenkiella parvula HOM05D007627 ORTHO05D009640 1.7e-13 79.3 92 50.0
AUR62037635 Chenopodium quinoa HOM05D007627 ORTHO05D009640 1.5e-12 76.3 76 56.6
Migut.B01085 Erythranthe guttata HOM05D007627 ORTHO05D009640 1.5e-12 76.3 77 51.9
unitig_578.g15942 Utricularia gibba HOM05D007627 ORTHO05D009640 1.5e-12 76.3 80 51.2
SalBow8G4146 Salvia bowleyana HOM05D007627 ORTHO05D009640 3.2e-12 75.1 92 48.9
AT1G47820 Arabidopsis thaliana HOM05D007627 ORTHO05D009640 4.2e-12 74.7 82 51.2
AL1G54240 Arabidopsis lyrata HOM05D007627 ORTHO05D009640 5.5e-12 74.3 94 48.9
AUR62044233 Chenopodium quinoa HOM05D007627 ORTHO05D009640 5.5e-12 74.3 76 56.6
HanXRQChr01g0000791 Helianthus annuus HOM05D007627 ORTHO05D009640 5.5e-12 74.3 92 43.5
Aqoxy1G00002 Aquilegia oxysepala HOM05D007627 ORTHO05D009640 7.2e-12 73.9 78 53.8
ECA248G3246 Erigeron canadensis HOM05D007627 ORTHO05D009640 9.5e-12 73.6 92 51.1
Carub.0001s3677 Capsella rubella HOM05D007627 ORTHO05D009640 4.7e-11 71.2 98 52.0
EL10Ac2g03554 Beta vulgaris HOM05D007627 ORTHO05D009640 1.0e-10 70.1 76 52.6
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 1.4e-10 69.7 79 49.4
ATR0807G116 Amborella trichopoda HOM05D007627 ORTHO05D009640 1.4e-10 69.7 95 49.5
Os06g0717300 Oryza sativa ssp. japonica HOM05D007627 ORTHO05D009640 1.4e-10 69.7 92 46.7
THA.LOC104824213 Tarenaya hassleriana HOM05D007627 ORTHO05D009640 8.8e-10 67.0 93 43.0
HanXRQChr11g0329361 Helianthus annuus HOM05D007627 ORTHO05D009640 1.2e-09 66.6 80 53.8
Carub.0001s3680 Capsella rubella HOM05D007627 ORTHO05D009640 2.6e-09 65.5 98 50.0
PSO700G0179 Papaver somniferum HOM05D007627 ORTHO05D009640 2.6e-09 65.5 58 62.1
HPP92_022749 Vanilla planifolia HOM05D007627 ORTHO05D009640 3.4e-09 65.1 85 48.2
Carub.0001s3693 Capsella rubella HOM05D007627 ORTHO05D009640 9.8e-09 63.5 98 49.0
Lsat_1_v5_gn_5_191420 Lactuca sativa HOM05D007627 ORTHO05D009640 1.1e-07 60.1 78 50.0
Zm00001eb228130 Zea mays HOM05D007627 ORTHO05D009640 2.4e-07 58.9 83 43.4
SHI28956 Sapria himalayana HOM05D000002 ORTHO05D000001 4.1e-07 58.2 61 44.3
CDE04G1409 Ceratophyllum demersum HOM05D000443 ORTHO05D001066 2.7e-06 55.5 92 40.2


User provided reference genes

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