Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04035_v3 Cicer arietinum L. HOM05D008729 ORTHO05D006541 1.3e-107 393.3 227 100.0
Psat3g195600 Pisum sativum HOM05D008729 ORTHO05D006541 3.8e-51 205.7 208 64.4
TPR.G6386 Trifolium pratense HOM05D008729 ORTHO05D006541 3.1e-45 186.0 204 62.7
TPR.G16999 Trifolium pratense HOM05D008729 ORTHO05D006541 1.5e-44 183.7 224 57.6
Glyma.18G253500 Glycine max HOM05D008729 ORTHO05D006541 5.0e-43 178.7 212 50.9
VMungo1383G3710 Vigna mungo HOM05D008729 ORTHO05D006541 1.5e-42 177.2 242 52.9
Medtr4g072710 Medicago truncatula HOM05D008729 ORTHO05D006541 7.2e-42 174.9 228 52.6
Medtr5g069720 Medicago truncatula HOM05D008729 ORTHO05D006541 2.1e-41 173.3 231 52.4
Medtr4g072520 Medicago truncatula HOM05D008729 ORTHO05D006541 2.7e-41 172.9 226 54.4
Phvul.008G026200 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 4.0e-40 169.1 206 54.9
Medtr7g007830 Medicago truncatula HOM05D008729 ORTHO05D006541 1.1e-39 167.5 269 45.4
Medtr4g072430 Medicago truncatula HOM05D008729 ORTHO05D006541 1.5e-39 167.2 234 49.6
Medtr5g008380 Medicago truncatula HOM05D008729 ORTHO05D006541 5.7e-39 165.2 198 55.6
Lj1g0024023 Lotus japonicus HOM05D008729 ORTHO05D006541 7.5e-39 164.9 201 52.7
Phvul.008G045500 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 7.5e-39 164.9 241 53.1
Medtr5g069420 Medicago truncatula HOM05D008729 ORTHO05D006541 4.8e-38 162.2 229 52.4
Medtr4g052440 Medicago truncatula HOM05D008729 ORTHO05D006541 5.5e-34 148.7 253 44.3
Lalb_Chr03g0040281 Lupinus albus HOM05D008729 ORTHO05D006541 2.7e-33 146.4 218 49.1
Medtr5g068870 Medicago truncatula HOM05D008729 ORTHO05D006541 1.0e-32 144.4 217 50.7
arahy.Tifrunner.gnm1.ann1.R8XUDN Arachis hypogaea HOM05D008729 ORTHO05D006541 4.5e-28 129.0 230 45.2
arahy.Tifrunner.gnm1.ann1.YJLF6P Arachis hypogaea HOM05D008729 ORTHO05D006541 1.1e-26 124.4 231 44.2
Medtr3g463670 Medicago truncatula HOM05D008729 ORTHO05D006541 1.8e-24 117.1 122 55.7
TWI09G1485 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 4.0e-24 115.9 208 37.0
Medtr5g066190 Medicago truncatula HOM05D008729 ORTHO05D006541 2.0e-23 113.6 122 54.9
TWI09G0902 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 3.4e-23 112.8 200 38.0
Glyma.09G242100 Glycine max HOM05D008729 ORTHO05D006541 7.5e-23 111.7 132 54.5
Prupe.1G051700 Prunus persica HOM05D013250 ORTHO05D006541 3.1e-21 106.3 231 35.1
Potri.004G028100 Populus trichocarpa HOM05D008171 ORTHO05D006541 4.1e-21 105.9 187 36.9
Duzib177G0581 Durio zibethinus HOM05D008171 ORTHO05D006541 5.4e-21 105.5 219 36.1
Sabra04G0016000 Salix brachista HOM05D008171 ORTHO05D006541 1.6e-20 104.0 187 36.4
ClCG09G011900 Citrullus lanatus HOM05D008171 ORTHO05D006541 2.0e-20 103.6 212 37.7
Actinidia31699 Actinidia chinensis HOM05D008171 ORTHO05D006541 7.7e-20 101.7 230 33.0
Gorai.007G269300 Gossypium raimondii HOM05D008171 ORTHO05D006541 7.7e-20 101.7 218 35.8
Gohir.D11G251100 Gossypium hirsutum HOM05D008171 ORTHO05D006541 2.9e-19 99.8 217 35.5
Gohir.A11G241700 Gossypium hirsutum HOM05D008171 ORTHO05D006541 3.8e-19 99.4 200 36.5
TPR.G32534 Trifolium pratense HOM05D008729 ORTHO05D006541 2.5e-18 96.7 111 62.2
Cc00_g01630 Coffea canephora HOM05D008729 ORTHO05D006541 3.3e-18 96.3 114 48.2
RcHm_v2.0_Chr4g0396051 Rosa chinensis HOM05D013250 ORTHO05D006541 5.6e-18 95.5 221 33.9
Cc03_g06490 Coffea canephora HOM05D008171 ORTHO05D006541 9.5e-18 94.7 181 35.9
Dinv43748 Davidia involucrata HOM05D008729 ORTHO05D006541 1.2e-17 94.4 114 43.0
Rhsim07G0050800 Rhododendron simsii HOM05D008171 ORTHO05D006541 1.2e-17 94.4 199 37.2
Sed0013719 Sechium edule HOM05D008171 ORTHO05D006541 1.6e-17 94.0 190 37.4
TPR.G30636 Trifolium pratense HOM05D008729 ORTHO05D006541 2.8e-17 93.2 58 77.6
FAN22G0719 Fragaria x ananassa HOM05D013250 ORTHO05D006541 6.1e-17 92.0 212 31.1
Dinv29788 Davidia involucrata HOM05D008171 ORTHO05D006541 1.8e-16 90.5 195 35.9
COL.COLO4_08914 Corchorus olitorius HOM05D008171 ORTHO05D006541 1.2e-15 87.8 212 34.0
MD16G1230200 Malus domestica HOM05D013250 ORTHO05D006541 1.2e-15 87.8 241 33.2
Thecc.04G268400 Theobroma cacao HOM05D008171 ORTHO05D006541 1.2e-15 87.8 195 31.8
Atru.chr3.807 Acer truncatum HOM05D008171 ORTHO05D006541 3.4e-15 86.3 189 33.3
FvH4_4g05130 Fragaria vesca HOM05D013250 ORTHO05D006541 4.4e-15 85.9 166 34.9
Cpa.g.sc59.27 Carica papaya HOM05D008171 ORTHO05D006541 5.7e-15 85.5 144 36.8
FAN12G1247 Fragaria x ananassa HOM05D013250 ORTHO05D006541 5.7e-15 85.5 164 33.5
Eucgr.F04204 Eucalyptus grandis HOM05D008729 ORTHO05D006541 9.8e-15 84.7 169 36.7
Medtr5g069080 Medicago truncatula HOM05D008729 ORTHO05D006541 9.8e-15 84.7 47 78.7
PGSC0003DMG400000820 Solanum tuberosum HOM05D008171 ORTHO05D006541 2.2e-14 83.6 142 34.5
PGR119G2083 Punica granatum HOM05D008729 ORTHO05D006541 4.9e-14 82.4 211 34.1
SGA_v2.0_scaffold577G53017 Striga asiatica HOM05D014524 ORTHO05D006541 4.9e-14 82.4 176 34.1
SGA_v2.0_scaffold31G12622 Striga asiatica HOM05D014524 ORTHO05D006541 8.3e-14 81.6 191 36.1
Migut.N00307 Erythranthe guttata HOM05D014524 ORTHO05D006541 1.1e-13 81.3 162 35.2
COL.COLO4_36427 Corchorus olitorius HOM05D008171 ORTHO05D006541 1.4e-13 80.9 213 30.5
Rhsim06G0142400 Rhododendron simsii HOM05D008729 ORTHO05D006541 1.4e-13 80.9 192 31.2
Manes.03G156600 Manihot esculenta HOM05D008171 ORTHO05D006541 1.8e-13 80.5 199 34.7
Sopen05g005780 Solanum pennellii HOM05D008171 ORTHO05D006541 4.1e-13 79.3 110 40.0
Sabra18G0128500 Salix brachista HOM05D008171 ORTHO05D006541 5.4e-13 79.0 181 34.8
CsaV3_3G049130 Cucumis sativus L. HOM05D008171 ORTHO05D006541 7.0e-13 78.6 205 36.1
SalBow8G4971 Salvia bowleyana HOM05D014524 ORTHO05D006541 7.0e-13 78.6 157 30.6
MSTRG.14227 Avicennia marina HOM05D014524 ORTHO05D006541 1.2e-12 77.8 236 30.5
TPR.G32541 Trifolium pratense HOM05D008729 ORTHO05D006541 1.2e-12 77.8 95 54.7
QL06p021862 Quercus lobata HOM05D008171 ORTHO05D006541 2.0e-12 77.0 155 40.6
MD13G1018300 Malus domestica HOM05D008171 ORTHO05D006541 4.6e-12 75.9 137 43.8
Psat0s3022g0120 Pisum sativum HOM05D008729 ORTHO05D006541 4.6e-12 75.9 100 55.0
Haze_11490 Corylus avellana HOM05D008171 ORTHO05D006541 5.9e-12 75.5 241 30.7
Potri.018G147100 Populus trichocarpa HOM05D008729 ORTHO05D006541 3.9e-11 72.8 177 32.8
Cfa014809 Carpinus fangiana HOM05D008171 ORTHO05D006541 5.0e-11 72.4 229 28.4
CANSAT78G0015 Cannabis sativa HOM05D008171 ORTHO05D006541 8.6e-11 71.6 197 38.1
Nitab4.5_0009780g0020 Nicotiana tabacum HOM05D008171 ORTHO05D006541 1.1e-10 71.2 113 38.1
Nitab4.5_0004705g0050 Nicotiana tabacum HOM05D008171 ORTHO05D006541 1.5e-10 70.9 106 37.7
DCAR_002271 Daucus carota HOM05D008729 ORTHO05D006541 3.3e-10 69.7 140 40.0
SalBow3G3100 Salvia bowleyana HOM05D014524 ORTHO05D006541 4.3e-10 69.3 144 31.9
Lj3g0008701 Lotus japonicus HOM05D008729 ORTHO05D006541 1.6e-09 67.4 120 42.5
FAN17G2546 Fragaria x ananassa HOM05D013250 ORTHO05D006541 2.8e-09 66.6 142 35.2
Psat4g093880 Pisum sativum HOM05D008729 ORTHO05D006541 4.7e-09 65.9 64 56.2
CiPaw.01G175900 Carya illinoinensis HOM05D008171 ORTHO05D006541 6.2e-09 65.5 98 33.7
TWI73G1043 Tripterygium wilfordii HOM05D008729 ORTHO05D006541 6.2e-09 65.5 127 37.0
Oeu061870.1 Olea europaea HOM05D008729 ORTHO05D006541 1.8e-08 63.9 113 38.1
COL.COLO4_37412 Corchorus olitorius HOM05D008171 ORTHO05D006541 1.2e-07 61.2 63 46.0
Medtr5g089450 Medicago truncatula HOM05D008729 ORTHO05D006541 7.5e-07 58.5 33 75.8
Thecc.05G282200 Theobroma cacao HOM05D008171 ORTHO05D006541 7.5e-07 58.5 90 36.7
Duzib106G2051 Durio zibethinus HOM05D008171 ORTHO05D006541 2.2e-06 57.0 139 33.8
Hma1.2p1_1240F.1_g269530 Hydrangea macrophylla HOM05D008729 ORTHO05D006541 8.3e-06 55.1 40 55.0


User provided reference genes

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