Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04025_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 5.5e-234 813.9 410 100.0
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 1.1e-197 693.3 446 83.2
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 2.7e-132 476.1 427 62.1
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 2.3e-131 473.0 445 60.4
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 3.0e-123 446.0 443 56.7
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 9.7e-122 441.0 409 59.4
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 1.2e-119 434.1 413 61.0
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 2.5e-117 426.4 428 58.6
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 1.8e-115 420.2 438 56.4
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 2.0e-114 416.8 448 54.2
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 4.8e-113 412.1 448 53.8
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 6.3e-113 411.8 429 55.2
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 2.3e-102 376.7 415 53.3
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 1.8e-99 367.1 436 48.9
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 1.3e-94 350.9 410 49.3
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 6.2e-60 235.7 423 38.3
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 5.3e-59 232.6 423 37.6
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 2.3e-54 217.2 340 39.4
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 8.7e-54 215.3 394 36.0
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 4.3e-53 213.0 421 38.0
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 5.3e-51 206.1 395 35.4
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 9.0e-51 205.3 301 45.2
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 9.0e-51 205.3 323 37.5
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 2.0e-50 204.1 344 36.9
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 2.0e-50 204.1 416 35.1
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 3.4e-50 203.4 334 37.7
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 7.6e-50 202.2 399 35.3
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 3.8e-49 199.9 419 35.1
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 4.9e-49 199.5 324 35.5
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 1.9e-48 197.6 334 37.1
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 2.4e-48 197.2 433 34.2
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 3.2e-48 196.8 311 38.6
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 5.5e-48 196.1 426 32.6
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 2.1e-47 194.1 434 32.7
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 5.1e-46 189.5 308 39.3
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 8.7e-46 188.7 426 35.0
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 1.1e-45 188.3 297 42.1
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 1.9e-45 187.6 439 32.8
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 2.5e-45 187.2 408 34.3
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 3.3e-45 186.8 420 33.3
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 3.1e-43 180.3 420 32.1
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 3.1e-43 180.3 341 35.8
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 5.3e-43 179.5 330 34.5
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 3.4e-42 176.8 294 36.4
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 4.5e-42 176.4 343 34.1
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 7.6e-42 175.6 332 34.3
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 3.5e-39 166.8 426 34.3
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 4.6e-39 166.4 386 33.4
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 1.8e-38 164.5 224 42.0
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.8e-38 164.5 246 39.8
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 2.3e-38 164.1 345 33.0
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 2.3e-38 164.1 316 35.4
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 1.5e-37 161.4 419 30.8
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 1.5e-37 161.4 422 29.9
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 1.9e-37 161.0 342 36.3
Thecc.07G102300 Theobroma cacao HOM05D004843 ORTHO05D005833 3.3e-37 160.2 208 43.3
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 7.4e-37 159.1 264 38.6
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 1.3e-36 158.3 433 31.6
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 2.1e-36 157.5 332 34.3
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 2.1e-36 157.5 264 38.3
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 3.7e-36 156.8 332 34.3
Atru.chr2.140 Acer truncatum HOM05D004843 ORTHO05D005833 8.2e-36 155.6 175 47.4
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 1.1e-35 155.2 426 30.8
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 1.2e-34 151.8 342 33.9
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.2e-33 147.5 285 36.8
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 2.9e-33 147.1 402 30.8
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 8.4e-33 145.6 314 34.7
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 1.4e-32 144.8 281 32.7
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 3.2e-32 143.7 416 31.0
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 7.2e-32 142.5 324 33.3
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.7e-31 140.6 295 35.3
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 1.1e-29 135.2 304 35.5
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 1.1e-29 135.2 333 33.9
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 9.7e-29 132.1 303 33.3
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 2.8e-28 130.6 434 30.0
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.8e-28 130.6 273 35.5
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 3.7e-28 130.2 219 35.6
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 4.1e-27 126.7 323 30.3
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 7.7e-26 122.5 304 31.2
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 5.5e-24 116.3 157 38.9
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 2.1e-23 114.4 281 28.1
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 4.6e-23 113.2 290 29.0
SHI27676 Sapria himalayana HOM05D004843 ORTHO05D005833 4.6e-23 113.2 371 28.8
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 6.1e-23 112.8 392 26.5
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 7.9e-23 112.5 395 27.3
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 1.4e-22 111.7 389 26.5
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 1.5e-21 108.2 159 36.5
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 1.5e-21 108.2 382 25.9
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 1.7e-20 104.8 424 25.0
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 2.2e-20 104.4 388 25.8
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 1.8e-19 101.3 402 27.4
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 4.1e-19 100.1 298 26.8
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 6.9e-19 99.4 361 25.5
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 9.1e-19 99.0 408 25.5
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 1.2e-18 98.6 404 25.5
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 1.2e-18 98.6 264 26.5
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 1.5e-18 98.2 147 40.8
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 1.5e-18 98.2 117 46.2
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 2.0e-18 97.8 414 23.9
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 2.6e-18 97.4 339 24.2
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 4.5e-18 96.7 403 25.3
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 5.9e-18 96.3 414 23.7
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 5.9e-18 96.3 414 23.7
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 2.9e-17 94.0 407 25.3
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 1.4e-16 91.7 407 25.1
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 6.1e-15 86.3 365 26.3
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 3.9e-14 83.6 238 33.2
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 1.3e-12 78.6 187 29.9
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 1.2e-10 72.0 249 26.5
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 1.2e-07 62.0 243 25.9
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 3.6e-07 60.5 170 29.4
MBI02_g30879_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 1.0e-06 58.9 175 27.4
Aqoxy7G02744 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 1.8e-06 58.2 76 36.8
Oeu018912.1 Olea europaea HOM05D004843 ORTHO05D005833 2.3e-06 57.8 45 53.3
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 2.3e-06 57.8 107 32.7
BraA09t38198Z Brassica rapa HOM05D004843 ORTHO05D005833 8.8e-06 55.8 93 36.6


User provided reference genes

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