Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 5.7e-181 637.5 331 100.0
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 1.0e-169 600.1 327 94.2
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 2.5e-168 595.5 327 93.3
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 4.2e-168 594.7 331 92.4
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 7.2e-168 594.0 327 93.0
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 7.2e-168 594.0 329 92.4
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 6.1e-167 590.9 327 92.7
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 1.0e-166 590.1 327 92.4
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 1.4e-166 589.7 329 91.5
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 8.9e-166 587.0 327 92.0
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 8.9e-166 587.0 327 92.0
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 1.2e-165 586.6 335 91.0
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 1.2e-165 586.6 329 90.9
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 5.7e-165 584.3 327 91.4
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 1.6e-162 576.2 328 90.2
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 3.5e-162 575.1 328 89.3
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 1.3e-161 573.2 328 89.0
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 8.6e-161 570.5 328 88.7
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 8.6e-161 570.5 327 89.3
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 1.1e-160 570.1 328 89.3
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.9e-160 569.3 328 89.6
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 2.5e-160 568.9 328 89.3
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 4.3e-160 568.2 329 88.1
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 4.3e-160 568.2 328 89.3
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 9.5e-160 567.0 326 89.6
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 1.2e-159 566.6 328 87.8
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 4.7e-159 564.7 327 88.7
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.4e-158 563.1 330 87.3
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 1.8e-158 562.8 325 88.9
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 3.1e-158 562.0 332 86.7
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 8.9e-158 560.5 328 87.2
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 3.4e-157 558.5 325 88.9
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 3.4e-157 558.5 325 88.9
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 5.8e-157 557.8 327 87.5
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 9.8e-157 557.0 325 88.6
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 9.8e-157 557.0 327 87.8
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 2.2e-156 555.8 327 87.5
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 4.9e-156 554.7 328 87.2
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 6.4e-156 554.3 328 87.5
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.1e-155 553.5 327 87.2
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.4e-155 553.1 327 86.2
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 3.2e-155 552.0 330 87.6
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 5.4e-155 551.2 327 86.2
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 9.2e-155 550.4 331 86.7
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 4.6e-154 548.1 327 84.7
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 6.0e-154 547.7 330 85.2
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 6.0e-154 547.7 330 85.2
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 1.0e-153 547.0 328 85.4
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 1.3e-153 546.6 328 85.4
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 1.3e-153 546.6 328 85.4
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 1.3e-153 546.6 328 85.4
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 1.3e-153 546.6 328 85.4
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.3e-153 546.6 330 84.8
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.3e-153 546.6 330 84.2
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 1.7e-153 546.2 328 84.1
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 1.7e-153 546.2 330 84.2
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 3.0e-153 545.4 330 84.5
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 3.0e-153 545.4 328 85.1
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 3.9e-153 545.0 327 85.0
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 5.0e-153 544.7 327 85.0
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 5.0e-153 544.7 330 84.2
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 1.9e-152 542.7 328 84.8
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 2.5e-152 542.3 330 83.9
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.3e-152 542.0 328 84.8
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 4.3e-152 541.6 328 84.5
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 5.6e-152 541.2 328 84.1
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 5.6e-152 541.2 326 85.0
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 5.6e-152 541.2 325 85.2
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 9.5e-152 540.4 328 85.4
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 1.2e-151 540.0 331 83.7
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.2e-151 540.0 330 83.0
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 2.1e-151 539.3 328 84.1
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 2.1e-151 539.3 328 83.2
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 2.8e-151 538.9 328 83.5
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.6e-151 538.5 328 83.5
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 3.6e-151 538.5 328 83.2
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 6.2e-151 537.7 329 84.5
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 1.4e-150 536.6 328 83.5
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 1.4e-150 536.6 328 85.1
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 1.8e-150 536.2 363 79.3
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 2.3e-150 535.8 382 75.9
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 3.1e-150 535.4 327 83.2
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 3.1e-150 535.4 331 83.4
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 1.5e-149 533.1 329 83.0
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 3.4e-149 531.9 355 77.7
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 1.3e-148 530.0 327 85.3
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 4.9e-148 528.1 327 82.3
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 8.3e-148 527.3 328 83.8
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.9e-147 526.2 328 83.5
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 4.1e-147 525.0 328 82.3
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 7.1e-147 524.2 333 80.2
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 2.1e-146 522.7 333 79.9
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 6.0e-146 521.2 451 65.0
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 7.8e-146 520.8 325 82.2
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.3e-145 520.0 314 84.4
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.1e-144 516.9 303 86.8
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 4.3e-144 515.0 329 82.4
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 1.1e-142 510.4 329 82.7
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 1.3e-140 503.4 327 79.2
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 1.7e-140 503.1 291 86.6
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 2.2e-140 502.7 331 81.9
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 2.9e-140 502.3 328 80.2
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 6.0e-138 494.6 328 77.7
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 9.6e-136 487.3 326 75.5
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 2.0e-133 479.6 330 74.5
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.7e-132 476.5 298 82.9
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.9e-131 473.0 374 70.6
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 1.2e-130 470.3 325 73.2
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 3.3e-128 462.2 326 75.8
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.4e-126 456.8 279 82.1
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 4.2e-123 445.3 329 72.9
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 1.0e-121 440.7 335 71.9
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 3.8e-116 422.2 234 92.3
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 9.6e-112 407.5 323 68.1
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 2.6e-109 399.4 317 63.7
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 1.7e-108 396.7 324 61.1
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 1.0e-105 387.5 329 62.0
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 5.1e-105 385.2 233 82.4
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 2.4e-102 376.3 273 72.2
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 5.0e-100 368.6 320 62.8
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 9.0e-94 347.8 197 90.9
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 1.4e-91 340.5 234 72.6
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.2e-90 337.4 328 61.6
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 1.4e-89 334.0 334 60.5
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 7.4e-88 328.2 220 80.5
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 1.3e-87 327.4 227 74.9
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 4.1e-86 322.4 220 78.6
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 2.3e-81 306.6 220 77.3
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 1.4e-78 297.4 167 88.6
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 2.1e-74 283.5 333 45.0
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 2.0e-69 266.9 161 86.3
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 1.1e-67 261.2 328 52.4
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.8e-65 253.8 163 78.5
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 6.3e-63 245.4 268 54.1
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 3.6e-58 229.6 132 87.1
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 4.5e-53 212.6 130 83.8
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 1.5e-43 181.0 161 64.0
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.1e-41 173.3 100 89.0
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 1.5e-40 171.0 149 60.4
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 2.4e-38 163.7 103 81.6
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 1.3e-36 157.9 205 49.3
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 1.1e-35 154.8 89 84.3
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 5.6e-35 152.5 88 88.6
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 3.1e-33 146.7 90 85.6
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 3.7e-31 139.8 80 86.2
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 2.1e-29 134.0 69 89.9
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 2.7e-29 133.7 88 76.1
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 1.7e-28 131.0 74 89.2
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.1e-27 128.3 77 85.7
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 4.7e-26 122.9 72 80.6
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 1.5e-24 117.9 72 83.3
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.9e-23 113.6 75 72.0
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 7.1e-22 109.0 69 78.3
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 4.7e-18 96.3 65 80.0
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 1.7e-15 87.8 62 77.4
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 1.1e-11 75.1 85 54.1
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 3.4e-08 63.5 48 68.8
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 4.5e-08 63.2 34 85.3


User provided reference genes

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