Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 2.2e-228 795.4 439 100.0
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 3.6e-122 442.6 454 63.7
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 1.4e-110 404.1 464 63.1
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 8.9e-89 331.6 454 49.8
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 2.2e-87 327.0 437 50.1
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 2.9e-87 326.6 455 49.7
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 6.0e-85 318.9 438 49.8
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 7.8e-85 318.5 331 64.7
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 1.1e-83 314.7 458 54.4
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 1.7e-71 274.2 437 45.5
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 3.4e-64 250.0 436 42.9
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 1.6e-61 241.1 424 42.2
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 6.9e-49 199.1 422 39.6
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 9.3e-46 188.7 454 37.7
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 1.5e-43 181.4 455 38.2
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 1.1e-41 175.3 428 38.1
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 1.0e-39 168.7 430 38.1
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 2.7e-37 160.6 434 36.9
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 4.6e-37 159.8 485 35.9
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.3e-36 157.5 463 37.4
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 5.1e-36 156.4 466 37.1
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 2.5e-35 154.1 461 35.4
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 7.4e-35 152.5 421 38.7
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 9.7e-35 152.1 466 35.8
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 3.7e-34 150.2 455 35.4
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.1e-33 148.7 450 34.0
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.4e-33 148.3 442 33.5
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 3.1e-33 147.1 440 35.7
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.1e-33 147.1 443 33.4
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 6.9e-33 146.0 465 35.7
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 9.0e-33 145.6 430 36.7
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 9.0e-33 145.6 467 35.8
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 1.5e-32 144.8 451 35.0
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 1.3e-31 141.7 450 33.8
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 3.8e-31 140.2 432 36.3
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.9e-30 137.9 447 34.7
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 2.5e-30 137.5 455 34.9
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 4.2e-30 136.7 477 33.5
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 4.6e-29 133.3 449 35.2
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 6.1e-29 132.9 460 35.7
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 6.1e-29 132.9 433 34.4
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 7.9e-29 132.5 394 35.8
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 2.3e-28 131.0 276 37.0
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 5.1e-28 129.8 462 34.8
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 6.7e-28 129.4 441 33.6
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 8.8e-28 129.0 465 35.3
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 2.5e-27 127.5 431 33.9
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 3.3e-27 127.1 460 33.9
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 5.7e-27 126.3 432 33.1
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 5.7e-27 126.3 436 32.6
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 7.4e-27 125.9 445 34.6
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 9.7e-27 125.6 477 32.7
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 2.8e-26 124.0 455 32.3
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 8.2e-26 122.5 453 34.2
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.4e-25 120.9 451 34.8
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 3.1e-25 120.6 450 34.4
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 5.9e-24 116.3 468 35.3
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 7.7e-24 115.9 476 32.6
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 2.2e-23 114.4 422 32.7
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 3.8e-23 113.6 302 38.1
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.2e-21 108.6 474 32.1
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 2.7e-21 107.5 361 34.9
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 3.6e-21 107.1 450 32.4
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 4.7e-21 106.7 436 31.0
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 4.7e-21 106.7 460 31.7
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 7.9e-21 105.9 403 31.5
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 7.9e-21 105.9 481 28.9
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 1.8e-20 104.8 442 32.1
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 1.8e-20 104.8 473 32.1
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 3.0e-20 104.0 473 33.0
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 3.9e-20 103.6 332 38.6
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 5.1e-20 103.2 443 31.8
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 1.1e-19 102.1 449 33.0
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 2.6e-19 100.9 403 32.3
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 5.7e-19 99.8 469 32.2
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 7.4e-19 99.4 441 31.7
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 2.2e-18 97.8 453 32.2
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 2.8e-18 97.4 438 31.7
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.1e-17 95.5 289 35.6
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.8e-17 94.7 423 31.0
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 2.4e-17 94.4 450 31.6
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 3.1e-17 94.0 473 31.7
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 1.2e-16 92.0 448 30.8
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 2.0e-16 91.3 463 30.2
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 5.9e-16 89.7 460 29.6
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 2.9e-15 87.4 272 35.3
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 3.8e-15 87.0 443 28.4
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 6.5e-15 86.3 457 29.1
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 1.9e-14 84.7 442 28.7
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 3.2e-14 84.0 447 29.1
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 4.2e-14 83.6 293 29.7
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 5.5e-14 83.2 449 31.4
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 5.5e-14 83.2 433 32.1
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 7.2e-14 82.8 439 30.1
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 9.4e-14 82.4 468 28.4
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.2e-13 82.0 451 30.2
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 2.1e-13 81.3 455 30.5
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 3.6e-13 80.5 429 29.6
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 6.1e-13 79.7 452 29.4
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 6.1e-13 79.7 473 27.5
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 1.5e-11 75.1 443 25.5
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 4.4e-11 73.6 446 27.8
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 5.7e-11 73.2 307 31.3
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 5.7e-11 73.2 448 28.6
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 9.7e-11 72.4 196 36.7
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 3.7e-10 70.5 469 27.3
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.1e-09 68.9 233 34.8
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 7.0e-09 66.2 439 26.7
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.7e-08 64.3 240 33.8
arahy.Tifrunner.gnm1.ann1.81KKWU Arachis hypogaea HOM05D009670 ORTHO05D010890 3.5e-08 63.9 261 31.0
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 4.5e-08 63.5 347 29.7
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 4.5e-08 63.5 347 29.7
arahy.Tifrunner.gnm1.ann1.33PIHY Arachis hypogaea HOM05D009670 ORTHO05D010890 7.7e-08 62.8 261 31.4
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 7.7e-08 62.8 442 28.7
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 8.5e-07 59.3 262 39.3
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 1.5e-06 58.5 463 26.6
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.9e-06 58.2 338 26.6
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 2.5e-06 57.8 433 26.6


User provided reference genes

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