Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 3.1e-157 558.5 301 100.0
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 3.1e-149 531.9 301 95.3
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 3.8e-147 525.0 301 93.7
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 1.9e-146 522.7 298 94.6
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 8.7e-144 513.8 300 91.3
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.5e-143 513.1 300 91.3
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 9.6e-143 510.4 298 91.9
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 1.5e-135 486.5 301 87.0
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 2.1e-134 482.6 301 86.4
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 3.1e-133 478.8 301 86.0
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 1.5e-132 476.5 300 84.3
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.9e-130 469.5 300 82.7
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 2.4e-130 469.2 300 82.3
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 2.4e-130 469.2 297 83.8
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 4.2e-130 468.4 301 82.7
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 4.6e-129 464.9 300 82.0
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 7.9e-129 464.2 299 81.9
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 7.9e-129 464.2 299 81.9
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 1.3e-128 463.4 300 81.3
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 9.6e-127 457.2 290 83.8
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.1e-126 456.1 295 84.4
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 6.2e-126 454.5 294 84.0
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 6.2e-126 454.5 297 81.5
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 4.0e-125 451.8 296 80.4
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 1.5e-124 449.9 299 80.9
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 1.7e-123 446.4 297 80.1
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 4.9e-123 444.9 298 79.5
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 6.5e-123 444.5 299 79.3
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 6.5e-123 444.5 298 79.5
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 2.5e-122 442.6 294 79.9
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 3.2e-122 442.2 299 79.3
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 4.2e-122 441.8 298 79.2
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 4.2e-122 441.8 297 80.5
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 5.5e-122 441.4 292 80.1
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 7.1e-122 441.0 297 78.5
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 1.6e-121 439.9 295 80.7
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 3.5e-121 438.7 292 79.1
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 1.0e-120 437.2 301 77.7
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.8e-120 436.4 290 80.7
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 3.0e-120 435.6 295 78.3
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 3.9e-120 435.3 293 79.5
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 8.7e-120 434.1 300 76.7
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 1.5e-119 433.3 303 77.9
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 2.5e-119 432.6 305 77.4
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 3.3e-119 432.2 304 77.3
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 7.4e-119 431.0 292 78.8
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 2.8e-118 429.1 300 76.0
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 2.8e-118 429.1 300 76.0
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 1.4e-117 426.8 292 77.7
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.4e-117 426.8 300 76.7
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.4e-117 426.8 300 76.7
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.4e-117 426.8 295 79.0
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.8e-117 426.4 300 75.3
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 1.8e-117 426.4 291 80.1
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 1.8e-117 426.4 294 77.2
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.8e-117 426.4 300 75.7
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 2.4e-117 426.0 299 76.9
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 2.4e-117 426.0 300 75.0
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 5.3e-117 424.9 303 75.9
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 5.3e-117 424.9 296 78.4
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 6.9e-117 424.5 299 77.9
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.2e-116 423.7 300 75.7
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.6e-116 422.5 300 73.7
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 3.4e-116 422.2 300 74.0
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 4.5e-116 421.8 300 73.3
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 7.6e-116 421.0 297 74.7
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 7.6e-116 421.0 300 73.3
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 7.6e-116 421.0 300 73.3
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 7.6e-116 421.0 300 73.3
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 1.3e-115 420.2 297 75.8
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 1.3e-115 420.2 300 75.3
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 3.8e-115 418.7 299 76.6
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 6.5e-115 417.9 299 75.9
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 6.5e-115 417.9 300 75.7
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 6.5e-115 417.9 300 74.0
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.2e-114 415.6 291 78.4
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 4.2e-114 415.2 300 72.7
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 5.5e-114 414.8 289 78.5
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 2.7e-113 412.5 298 75.2
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 1.0e-112 410.6 296 76.0
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 3.9e-112 408.7 292 74.0
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 3.9e-112 408.7 297 73.7
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 5.7e-111 404.8 301 74.1
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 9.7e-111 404.1 292 73.6
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 1.3e-110 403.7 281 77.6
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 2.4e-109 399.4 291 74.9
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 4.1e-109 398.7 295 71.9
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.1e-109 398.7 297 73.1
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 2.2e-107 392.9 300 71.3
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 2.2e-107 392.9 296 70.6
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 8.5e-107 391.0 281 75.4
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.9e-106 389.8 281 77.2
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 2.5e-106 389.4 300 69.7
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 3.6e-105 385.6 297 70.4
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 4.7e-105 385.2 298 66.8
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 7.9e-105 384.4 294 70.7
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.1e-103 380.6 224 92.4
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 1.5e-103 380.2 299 68.2
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.4e-101 373.6 281 74.7
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 2.4e-101 372.9 296 68.6
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 6.9e-101 371.3 299 66.2
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 5.9e-100 368.2 295 66.8
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 7.2e-98 361.3 299 64.2
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 4.4e-95 352.1 290 65.2
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 1.7e-94 350.1 292 68.2
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 4.1e-93 345.5 281 66.2
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.5e-90 337.0 195 93.3
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 9.7e-87 324.3 279 64.9
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.4e-80 303.9 306 56.5
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 1.3e-78 297.4 291 59.8
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 8.0e-73 278.1 193 78.8
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 2.5e-66 256.5 163 82.8
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 1.2e-65 254.2 299 49.8
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 6.8e-64 248.4 139 94.2
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 9.8e-63 244.6 159 81.1
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 1.3e-62 244.2 242 64.0
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 6.6e-59 231.9 195 65.6
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 9.5e-58 228.0 292 48.6
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 1.4e-56 224.2 338 44.1
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 3.4e-55 219.5 291 49.5
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 2.2e-54 216.9 191 60.2
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 2.0e-47 193.7 186 62.4
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 1.3e-46 191.0 115 91.3
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 4.9e-46 189.1 138 72.5
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 9.9e-39 164.9 207 47.3
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 3.9e-35 152.9 105 74.3
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 1.9e-34 150.6 182 45.6
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 3.1e-32 143.3 169 50.9
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.6e-31 140.2 97 81.4
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 9.9e-31 138.3 95 71.6
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 3.4e-23 113.2 86 69.8
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 1.8e-19 100.9 108 60.2
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 5.6e-18 95.9 60 80.0
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.6e-17 94.4 150 44.0
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 6.2e-17 92.4 302 29.8
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 1.8e-16 90.9 282 29.4
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 3.8e-14 83.2 46 80.4
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 8.4e-14 82.0 172 35.5
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 1.4e-13 81.3 42 83.3
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 8.2e-09 65.5 57 64.9


User provided reference genes

Program Settings