Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 0.0e+00 1132.5 569 100.0
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 1.8e-307 1058.5 570 92.6
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 1.2e-300 1035.8 572 91.6
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 1.5e-282 975.7 570 84.6
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 4.4e-282 974.2 566 85.3
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 5.8e-282 973.8 570 84.4
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 1.2e-276 956.1 561 83.8
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 4.7e-276 954.1 565 84.2
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 3.4e-274 948.0 561 83.4
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 1.9e-272 942.2 559 83.7
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 1.6e-271 939.1 560 83.2
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 1.6e-268 929.1 547 82.6
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 4.5e-266 921.0 568 79.4
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 1.7e-265 919.1 568 79.0
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 3.8e-265 917.9 566 78.6
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 8.4e-265 916.8 576 79.2
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 1.1e-264 916.4 570 78.8
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 1.1e-264 916.4 568 78.7
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 1.1e-264 916.4 563 79.0
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 1.4e-264 916.0 577 78.2
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 4.2e-264 914.4 577 77.8
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 9.3e-264 913.3 577 77.5
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 9.3e-264 913.3 565 78.9
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 2.1e-263 912.1 567 78.7
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 2.1e-263 912.1 548 81.6
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 3.5e-263 911.4 570 79.1
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 4.6e-263 911.0 570 79.5
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 3.0e-262 908.3 547 81.2
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 6.7e-262 907.1 567 77.8
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 8.7e-262 906.7 578 76.8
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 1.5e-261 906.0 568 78.7
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 1.6e-260 902.5 566 78.1
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 3.6e-260 901.4 567 77.4
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 3.6e-260 901.4 581 75.4
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 8.1e-260 900.2 567 77.1
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 1.4e-259 899.4 571 77.4
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 3.1e-259 898.3 579 76.3
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 3.1e-259 898.3 566 78.6
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 4.0e-259 897.9 576 76.7
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 2.6e-258 895.2 603 74.0
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 3.4e-258 894.8 572 77.4
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 7.6e-258 893.6 563 78.0
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 2.2e-257 892.1 569 76.4
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 8.4e-257 890.2 560 77.3
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 1.9e-256 889.0 567 77.2
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 7.1e-256 887.1 562 76.7
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 3.5e-255 884.8 568 75.9
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 4.6e-255 884.4 566 75.4
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 7.9e-255 883.6 570 76.5
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 2.3e-254 882.1 574 75.3
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 8.7e-254 880.2 565 76.5
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 3.3e-253 878.2 531 79.5
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 3.7e-252 874.8 567 75.5
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 4.0e-251 871.3 565 76.3
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 5.3e-251 870.9 568 75.4
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 9.0e-251 870.2 572 73.6
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 1.2e-250 869.8 571 73.6
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 2.6e-250 868.6 571 73.6
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 3.4e-250 868.2 566 75.1
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 3.4e-250 868.2 567 73.4
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 5.8e-250 867.5 571 72.9
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 5.8e-250 867.5 565 74.7
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 1.0e-249 866.7 571 73.7
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 1.7e-249 865.9 566 74.9
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 4.9e-249 864.4 572 73.6
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 6.5e-249 864.0 565 74.9
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 6.5e-249 864.0 565 74.9
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 8.4e-249 863.6 566 75.3
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 1.4e-248 862.8 566 74.7
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 3.2e-248 861.7 625 69.8
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 4.2e-248 861.3 573 74.7
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 4.2e-248 861.3 573 74.7
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 5.5e-248 860.9 553 74.9
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 7.1e-248 860.5 569 74.3
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 9.3e-248 860.1 569 74.2
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 3.5e-247 858.2 568 73.6
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 3.5e-247 858.2 514 80.4
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 4.6e-247 857.8 574 74.4
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 6.0e-247 857.4 569 74.2
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 5.1e-246 854.4 566 72.4
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 5.1e-246 854.4 569 73.3
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 5.1e-246 854.4 573 73.6
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 1.1e-245 853.2 547 75.3
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 7.4e-245 850.5 568 73.4
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 1.8e-243 845.9 514 77.8
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 9.0e-243 843.6 596 69.3
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 3.4e-242 841.6 556 73.4
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 5.9e-242 840.9 568 72.4
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 1.3e-241 839.7 588 70.9
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 7.9e-239 830.5 571 72.5
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 1.9e-237 825.9 529 77.3
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 4.3e-237 824.7 571 70.1
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 6.9e-235 817.4 567 72.5
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 6.1e-231 804.3 569 68.7
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 3.9e-230 801.6 553 73.2
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 6.7e-230 800.8 530 72.6
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 8.8e-230 800.4 481 82.1
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 1.7e-228 796.2 571 69.4
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 6.5e-217 757.7 427 90.2
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 1.4e-214 750.0 493 73.6
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 4.8e-212 741.5 610 61.1
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 9.4e-208 727.2 448 78.3
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 1.0e-206 723.8 570 65.3
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 8.8e-198 694.1 435 77.2
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 5.7e-197 691.4 437 76.0
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 3.7e-196 688.7 408 80.6
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 5.2e-190 668.3 439 75.4
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 5.6e-184 648.3 431 75.9
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 4.1e-179 632.1 551 58.3
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 6.8e-174 614.8 430 70.0
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 1.3e-161 573.9 445 67.4
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 1.3e-148 530.8 576 50.2
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 1.7e-148 530.4 367 74.7
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 3.8e-148 529.3 545 52.3
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 1.8e-145 520.4 565 51.2
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 4.8e-119 432.6 580 41.6
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 5.0e-116 422.5 368 59.5
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 4.5e-93 346.3 222 73.4
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 2.1e-90 337.4 213 79.3
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 4.0e-89 333.2 387 50.6
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 4.2e-83 313.2 272 62.9
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 5.5e-83 312.8 583 38.9
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 4.0e-81 306.6 223 64.1
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 5.0e-68 263.1 603 33.0
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 2.3e-65 254.2 546 32.8
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 1.7e-55 221.5 507 33.5
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.7e-53 214.2 148 72.3
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.3e-52 211.1 151 69.5
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.8e-50 204.1 139 72.7
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 5.8e-48 196.4 128 73.4
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 3.6e-42 177.2 95 81.1
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 1.2e-40 172.2 182 58.8
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 4.2e-38 163.7 139 62.6
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 5.8e-24 116.7 85 68.2
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 9.3e-22 109.4 74 70.3
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 1.1e-17 95.9 50 80.0
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 1.8e-17 95.1 60 66.7
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 3.0e-12 77.8 56 66.1
Lsat_1_v5_gn_3_114580 Lactuca sativa HOM05D002100 ORTHO05D002310 8.2e-10 69.7 59 66.1
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 3.8e-07 60.8 328 25.6
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 5.0e-07 60.5 301 26.9
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 1.1e-06 59.3 306 26.5
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 1.1e-06 59.3 315 25.4
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 1.1e-06 59.3 313 25.6
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 1.9e-06 58.5 302 26.8
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 2.5e-06 58.2 328 25.9
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 5.5e-06 57.0 327 25.4
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 5.5e-06 57.0 327 25.4


User provided reference genes

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