Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 4.0e-157 558.1 298 100.0
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 1.4e-106 390.2 299 70.6
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 1.7e-104 383.3 292 71.6
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 1.1e-77 294.3 286 56.6
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 2.4e-77 293.1 262 63.7
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 3.4e-76 289.3 253 65.6
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 2.0e-71 273.5 229 64.2
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 2.2e-70 270.0 255 61.2
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 1.1e-69 267.7 247 61.5
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 5.0e-67 258.8 265 58.5
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 6.1e-65 251.9 236 60.6
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 2.8e-54 216.5 232 54.7
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.8e-53 213.8 232 54.7
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 5.7e-47 192.2 204 54.9
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 1.3e-46 191.0 226 49.1
Psat0s911g0040 Pisum sativum HOM05D006067 ORTHO05D007327 2.2e-46 190.3 208 59.1
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 1.8e-45 187.2 261 47.9
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 9.8e-39 164.9 193 47.2
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 3.7e-38 162.9 261 39.1
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 4.9e-38 162.5 230 44.8
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.1e-37 161.4 261 38.7
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 2.4e-37 160.2 194 43.8
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 7.0e-37 158.7 190 51.6
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 9.2e-37 158.3 220 40.9
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.2e-36 157.9 249 39.4
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 2.0e-36 157.1 198 44.4
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 1.7e-35 154.1 215 45.1
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 2.9e-35 153.3 213 45.5
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 3.8e-35 152.9 261 37.5
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 5.0e-35 152.5 240 42.5
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 1.1e-34 151.4 219 45.7
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 1.5e-34 151.0 200 46.0
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 2.1e-33 147.1 190 43.7
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 1.0e-32 144.8 193 45.6
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 5.2e-32 142.5 211 47.4
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 5.2e-32 142.5 186 44.1
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 5.7e-31 139.0 185 40.0
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 7.5e-31 138.7 217 43.3
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 1.7e-30 137.5 213 41.8
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 1.7e-30 137.5 191 44.5
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.7e-30 137.5 188 44.7
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 2.9e-30 136.7 230 38.3
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 1.4e-29 134.4 192 43.2
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 1.8e-29 134.0 230 41.7
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 9.2e-29 131.7 190 45.8
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 1.6e-28 131.0 180 37.8
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.6e-28 131.0 193 40.9
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 2.0e-28 130.6 110 49.1
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 2.0e-28 130.6 225 36.4
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 3.5e-28 129.8 192 39.6
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 3.5e-28 129.8 190 40.5
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 5.9e-28 129.0 191 38.7
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 1.0e-27 128.3 116 55.2
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.7e-27 127.5 126 46.0
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 2.3e-27 127.1 169 44.4
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 2.3e-27 127.1 193 47.2
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 2.3e-27 127.1 123 47.2
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 3.0e-27 126.7 218 39.4
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 5.0e-27 125.9 92 62.0
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 5.0e-27 125.9 187 35.3
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 6.6e-27 125.6 185 38.4
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 8.6e-27 125.2 120 48.3
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 1.9e-26 124.0 211 35.5
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 4.3e-26 122.9 182 40.1
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 4.3e-26 122.9 196 39.8
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 7.3e-26 122.1 172 42.4
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 1.2e-25 121.3 203 43.3
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 1.2e-25 121.3 128 48.4
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 1.6e-25 120.9 169 47.9
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 2.1e-25 120.6 194 41.2
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 2.8e-25 120.2 192 40.1
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 8.0e-25 118.6 173 38.7
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 1.0e-24 118.2 167 44.3
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 2.3e-24 117.1 194 41.2
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 4.0e-24 116.3 191 36.1
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 6.8e-24 115.5 169 42.0
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.2e-23 114.8 147 40.8
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 2.0e-23 114.0 105 46.7
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 2.6e-23 113.6 119 47.1
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 2.6e-23 113.6 237 37.1
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 3.4e-23 113.2 96 56.2
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 4.4e-23 112.8 128 43.0
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 4.4e-23 112.8 90 55.6
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 4.4e-23 112.8 117 50.4
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 5.8e-23 112.5 126 46.8
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.3e-22 111.3 112 48.2
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 2.9e-22 110.2 229 41.0
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 3.7e-22 109.8 192 42.2
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 3.7e-22 109.8 126 46.8
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 4.9e-22 109.4 188 44.7
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 8.3e-22 108.6 203 36.5
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 8.3e-22 108.6 181 35.4
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.1e-21 108.2 127 45.7
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 1.1e-21 108.2 166 34.3
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.4e-21 107.8 85 51.8
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 2.4e-21 107.1 165 42.4
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 3.2e-21 106.7 166 34.9
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 1.2e-20 104.8 94 52.1
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 6.0e-20 102.4 115 46.1
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 7.8e-20 102.1 186 33.3
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 1.0e-19 101.7 162 34.6
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 1.0e-19 101.7 95 54.7
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 1.0e-19 101.7 171 35.1
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 1.3e-19 101.3 162 34.6
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.3e-19 101.3 170 40.6
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 1.7e-19 100.9 88 47.7
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 1.7e-19 100.9 162 35.2
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 1.7e-19 100.9 162 34.6
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 5.0e-19 99.4 210 31.4
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 6.6e-19 99.0 164 34.1
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.9e-18 97.4 79 50.6
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 8.1e-17 92.0 90 52.2
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 1.8e-16 90.9 130 36.9
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 2.6e-15 87.0 72 56.9
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 3.4e-15 86.7 209 27.8
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 4.4e-15 86.3 93 44.1
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 4.4e-15 86.3 77 57.1
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 4.9e-14 82.8 80 50.0
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 5.4e-13 79.3 77 41.6
Psat0s3989g0040 Pisum sativum HOM05D006067 ORTHO05D007327 7.1e-13 79.0 60 65.0
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 9.2e-13 78.6 83 43.4
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 2.3e-11 73.9 82 40.2
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 1.8e-08 64.3 56 50.0
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.3e-08 63.9 49 53.1
FAN21G2926 Fragaria x ananassa HOM05D006067 ORTHO05D007327 4.9e-06 56.2 38 65.8


User provided reference genes

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