Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 6.3e-282 973.4 472 100.0
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 3.2e-262 907.9 472 92.6
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 5.2e-252 874.0 469 90.0
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.2e-240 836.3 474 85.7
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 2.1e-237 825.5 480 84.2
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 2.0e-235 818.9 480 84.0
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 3.2e-233 811.6 480 82.9
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 2.0e-232 808.9 478 83.7
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 3.3e-230 801.6 480 82.7
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.4e-212 743.0 478 75.1
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 5.2e-212 741.1 482 77.4
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 9.2e-209 730.3 482 76.6
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 1.7e-207 726.1 481 73.6
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.0e-207 725.3 478 74.3
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 5.1e-207 724.5 482 72.2
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.9e-206 722.6 479 74.5
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 2.8e-205 718.8 482 73.9
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 3.6e-205 718.4 477 73.6
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 6.2e-205 717.6 480 73.1
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 6.2e-205 717.6 481 73.6
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 6.9e-204 714.1 480 73.3
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 2.0e-203 712.6 481 73.4
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 1.7e-202 709.5 481 73.2
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 6.4e-202 707.6 475 72.0
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.9e-201 706.1 482 72.2
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 5.4e-201 704.5 481 71.9
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 9.3e-201 703.7 480 72.3
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 9.3e-201 703.7 481 74.0
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 1.2e-200 703.4 481 72.8
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.2e-200 703.4 484 72.3
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 1.6e-200 703.0 484 71.1
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.0e-199 700.3 479 74.1
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.3e-199 699.9 476 71.8
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.7e-199 699.5 481 71.1
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 2.3e-199 699.1 480 72.7
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.3e-199 699.1 482 71.4
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.9e-199 698.4 475 71.6
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.5e-198 696.4 476 71.6
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 4.8e-197 691.4 484 71.9
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 1.8e-196 689.5 487 71.7
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 2.4e-196 689.1 479 68.3
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 9.0e-196 687.2 478 69.5
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 4.5e-195 684.9 478 70.7
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 5.8e-195 684.5 478 69.5
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 9.9e-195 683.7 483 70.8
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 1.3e-194 683.3 475 69.5
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 3.8e-194 681.8 484 68.2
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 6.4e-194 681.0 487 68.6
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 8.4e-194 680.6 482 68.9
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 1.4e-193 679.9 488 69.3
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 1.9e-193 679.5 486 69.5
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 3.0e-191 672.2 479 68.9
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 5.1e-191 671.4 474 67.5
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.1e-191 671.4 523 66.9
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 8.7e-191 670.6 506 65.4
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 3.3e-190 668.7 479 68.5
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 5.6e-190 667.9 484 67.8
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 9.6e-190 667.2 523 64.4
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.8e-189 665.6 521 66.6
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 3.1e-188 662.1 534 63.9
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.2e-187 660.2 479 67.4
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 1.2e-187 660.2 489 66.5
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.2e-187 660.2 506 67.8
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 2.6e-187 659.1 521 63.7
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 4.5e-187 658.3 521 63.7
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 5.8e-187 657.9 479 68.1
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 7.6e-187 657.5 521 63.7
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 2.4e-185 652.5 546 61.0
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 1.2e-184 650.2 521 62.2
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.6e-184 649.8 475 66.9
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.8e-183 646.4 521 63.1
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.8e-183 646.4 438 71.2
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 1.3e-181 640.2 504 64.1
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 2.1e-181 639.4 483 64.8
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 6.2e-181 637.9 542 60.7
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.4e-180 636.0 441 71.4
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 9.0e-180 634.0 485 65.8
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 1.2e-179 633.6 487 65.3
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.6e-179 632.5 483 66.3
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 4.5e-179 631.7 485 65.4
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 2.9e-178 629.0 479 64.7
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 4.9e-178 628.2 484 65.1
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 4.9e-178 628.2 482 66.2
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 3.9e-175 618.6 481 65.3
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 5.1e-175 618.2 484 64.9
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 5.1e-175 618.2 441 68.5
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 8.7e-175 617.5 438 67.6
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 3.3e-174 615.5 474 63.9
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.6e-173 613.2 480 65.2
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 2.8e-173 612.5 479 64.9
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 8.2e-173 610.9 474 64.1
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.1e-172 610.5 493 63.5
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 5.3e-172 608.2 478 63.4
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.2e-171 607.1 479 62.8
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 8.5e-170 600.9 475 62.3
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 6.1e-168 594.7 475 63.2
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 6.1e-168 594.7 476 62.8
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 1.8e-167 593.2 482 62.0
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 1.8e-167 593.2 475 62.7
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 1.8e-167 593.2 475 62.7
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 2.3e-167 592.8 481 63.2
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 3.9e-167 592.0 481 63.2
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 6.7e-167 591.3 481 63.0
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 1.7e-165 586.6 481 60.5
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 3.7e-165 585.5 472 62.3
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 6.3e-165 584.7 481 62.2
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 8.2e-165 584.3 481 61.3
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 8.2e-165 584.3 475 62.3
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 3.4e-163 578.9 391 73.1
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.0e-162 577.4 482 61.6
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 1.3e-162 577.0 480 62.1
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 2.5e-161 572.8 391 72.1
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.7e-157 560.1 392 70.7
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 2.2e-157 559.7 398 67.6
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 3.1e-156 555.8 395 69.6
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 5.3e-156 555.1 411 69.8
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 4.5e-155 552.0 498 55.2
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 5.0e-154 548.5 497 54.7
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 9.4e-153 544.3 436 63.1
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 9.1e-148 527.7 290 82.8
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 5.9e-147 525.0 520 52.7
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 2.5e-145 519.6 440 62.7
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.3e-143 513.1 460 59.6
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 6.7e-143 511.5 441 61.9
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.4e-140 503.8 355 72.7
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 3.1e-140 502.7 432 56.7
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 4.5e-139 498.8 467 54.4
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.3e-138 497.3 399 64.2
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 5.0e-138 495.4 478 54.2
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 2.7e-136 489.6 283 77.4
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 4.0e-135 485.7 287 77.4
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 8.9e-127 458.0 321 65.4
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 2.4e-124 449.9 300 68.7
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 9.8e-118 427.9 286 68.2
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.8e-111 407.1 312 63.1
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 4.0e-111 406.0 395 51.6
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 8.3e-109 398.3 290 62.8
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.6e-104 384.0 471 43.5
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 4.7e-104 382.5 304 58.6
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 9.9e-102 374.8 299 65.9
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 2.1e-96 357.1 416 45.4
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 2.4e-87 327.0 371 49.6
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.8e-85 319.7 301 59.5
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.3e-69 268.1 434 41.2
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 2.1e-67 260.8 205 61.5
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 9.0e-55 218.8 191 61.8
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.2e-51 208.4 179 60.3
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 6.5e-45 186.0 190 56.3
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.6e-43 181.4 156 63.5
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 4.4e-41 173.3 109 78.0
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.1e-39 165.6 95 80.0
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 1.5e-38 164.9 144 55.6
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 1.5e-38 164.9 144 55.6
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.5e-38 163.3 92 80.4
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 2.2e-37 161.0 148 56.8
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.1e-36 158.7 95 75.8
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 7.2e-36 156.0 86 83.7
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 7.2e-36 156.0 86 83.7
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 3.0e-34 150.6 120 66.7
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.5e-33 148.3 127 50.4
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.0e-29 135.6 172 44.8
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 5.2e-26 123.2 156 48.1
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 2.0e-25 121.3 137 48.9
Psat5g113520 Pisum sativum HOM05D004150 ORTHO05D329029 3.7e-24 117.1 92 68.5
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 2.4e-23 114.4 184 44.6
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.9e-20 104.8 66 77.3
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.6e-14 85.1 45 84.4
VMungo1309G0651 Vigna mungo HOM05D004150 ORTHO05D435762 4.7e-11 73.6 60 65.0


User provided reference genes

Program Settings